Author

J. Fresnedo Ramirez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 5

Signature Assays, Organisms & Methods

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Organism:plant (other)· 5 Assay:DNA methylation· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

K. M. D'Amico-Willman· 4 shared T. M. Gradziel· 4 shared C. Niederhuth· 2 shared E. S. Anderson· 2 shared T. Meulia· 2 shared W. Z. Ouma· 2 shared D. Doud Miller· 1 shared E. A. Bilbrey· 1 shared

Activity by Year

2020-2021 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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4 shared papersPlant Biology

K. M. D'Amico-Willman

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5 papers

Recent·Most cited

Whole-genome sequence and methylome profiling of the almond (Prunus dulcis D.A.Webb) cultivar Nonpareil

K. M. D'Amico-Willman, W. Z. Ouma, T. Meulia, G. M. Sideli, T. M. Gradziel, J. Fresnedo Ramirez

The paper generates a whole-genome sequence and methylome profile for the almond cultivar Nonpareil, revealing gene annotations and tissue-specific methylation patterns.

bioRxiv · Oct 27, 2021Plant Biology

Integrating genomics and multi-platform metabolomics enables metabolite QTL detection in breeding-relevant apple germplasm

E. A. Bilbrey, K. Williamson, E. Hatzakis, D. Doud Miller, J. Fresnedo Ramirez, J. L. Cooperstone

The paper develops a high-throughput integration strategy for genomic and multi-platform metabolomics data to detect metabolite QTL in apple germplasm, identifying novel candidate gene-metabolite relationships.

New Phytologist · Oct 4, 2021Peer-reviewedPlant Biology

Hypermethylation is associated with increased age in almond (Prunus dulcis D.A. Webb) accessions

K. M. D'Amico-Willman, C. Niederhuth, M. Sovic, E. S. Anderson, T. M. Gradziel, J. Fresnedo Ramirez

This study identifies hypermethylation and decreased small RNA expression with age in almond germplasm, suggesting potential biomarkers for aging-related disorders.

bioRxiv · May 2, 2021Plant Biology

Integrated analysis of the methylome and transcriptome of twin almonds (Prunus dulcis D.A.Webb) reveals genomic features associated with non-infectious bud failure

K. M. D'Amico-Willman, C. Niederhuth, M. R. Willman, T. M. Gradziel, W. Z. Ouma, T. Meulia, J. Fresnedo Ramirez

This paper identifies hypomethylation and differentially expressed genes associated with non-infectious bud failure in almond using twin study analysis.

bioRxiv · Feb 8, 2021 · PreprintPlant Biology

Telomere length and TERT expression are associated with age in almond (Prunus dulcis)

K. M. D'Amico-Willman, E. S. Anderson, T. M. Gradziel, J. Fresnedo Ramirez

This study investigates telomere length and TERT expression as biomarkers of aging in almond, finding a marginal but significant association with age.

bioRxiv · Sep 25, 2020 · PreprintPlant Biology