Author

J. L. Lopez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:cell type annotation· 2 Assay:metagenomics· 2 Organism:bacteria (other)· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Assay:DNA methylation· 1

Frequent Co-Authors

B. E. Dutilh· 2 shared J. J. Sanchez-Gil· 2 shared R. de Jonge· 2 shared A. Fourie· 1 shared A. Fourie-Fouche· 1 shared A. Lagares· 1 shared B. M. Discher· 1 shared C. Hernandez-Chavez· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersMicrobiology

B. E. Dutilh

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Bacterial family-specific enrichment and functions of secretion systems in the rhizosphere

A. Fourie, J. L. Lopez, J. J. Sanchez-Gil, S. W. M. Poppeliers, R. de Jonge, B. E. Dutilh

This study identifies bacterial secretion systems enriched in the rhizosphere and their associated taxa, suggesting potential applications for bioinoculant optimization.

bioRxiv · May 7, 2024 · PreprintMicrobiology

The tetrapeptide sequence of IL-1β regulates its recruitment and activation by inflammatory caspases

P. M. Exconde, C. Hernandez-Chavez, M. B. Bray, J. L. Lopez, T. Srivastava, M. S. Egan, J. Zhang, S. Shin, B. M. Discher, C. Y. Taabazuing

This study identifies that the tetrapeptide sequence of IL-1β regulates its cleavage by non-canonical inflammasomes, revealing a mechanism for inflammation control.

bioRxiv · Feb 16, 2023 · PreprintImmunology

Copiotrophs dominate rhizosphere microbiomes and growth rate potential is a major factor explaining the rhizosphere effect

J. L. Lopez, N. Pappas, S. W. Poppeliers, J. J. Sanchez-Gil, A. Fourie-Fouche, R. de Jonge, B. E. Dutilh

This study identifies growth rate potential as a key factor explaining the rhizosphere effect by analyzing microbial communities and genome data from multiple plant-soil systems.

bioRxiv · Nov 24, 2022Microbiology

Codon-usage optimization in the prokaryotic tree of life: How synonymous codons are differentially selected in sequence domains with different expression levels and degrees of conservation.

J. L. Lopez, M. J. Lozano, M. L. Fabre, A. Lagares

The paper analyzes codon usage across 29 prokaryote families to show how translational efficiency and accuracy shape codon selection in relation to expression levels and conservation.

mBio · Aug 25, 2020Peer-reviewedMicrobiology