J. Sielemann

Transcription factors mediating regulation of photosynthesis

The paper identifies and validates transcription factors regulating photosynthesis using machine learning and finds they operate in a non-hierarchical, interlooped network.

Local DNA shape is a general principle of transcription factor binding specificity in Arabidopsis thaliana

This paper uses DNA shape features to improve transcription factor binding prediction in Arabidopsis thaliana, showing that DNA shape enhances prediction beyond sequence alone.