Using the NCBI AMRFinder Tool to Determine Antimicrobial Resistance Genotype-Phenotype Correlations Within a Collection of NARMS Isolates
M. Feldgarden, V. Brover, D. H. Haft, A. B. Prasad, D. J. Slotta, I. Tolstoy, G. H. Tyson, S. Zhao, C.-H. Hsu, P. F. McDermott, D. A. Tadesse, C. Morales, M. Simmons, G. Tillman, J. Wasilenko, , W. Klimke
This paper evaluates AMRFinder, a tool for detecting antimicrobial resistance genes, against phenotypic data from 6,242 isolates, finding high consistency and improved accuracy over previous methods.
bioRxiv · Feb 15, 2019Microbiology