Author

James Gray

Allen Institute for Brain Science

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Neuroscience· 2 Cancer Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:mouse· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2

Frequent Co-Authors

Alexandra GlandoniD· 2 shared Amy TorkelsoniD· 2 shared Boaz P. LeviiD· 2 shared Bosiljka TasiciD· 2 shared Changkyu LeeiD· 2 shared Christine RimoriniD· 2 shared Cindy T. J. van VelthoveniD· 2 shared Daniel HirschsteiniD· 2 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersNeuroscience

Alexandra GlandonORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

In garden dormouse cerebral cortex, specific transcriptional programs exist for all major phases of hibernation

Adrian Jakubowski-Addabbo, Maarten R. Hamberg, Fia Fia Lie, James Gray, Roelof A. Hut, Maurits Roorda, Victor Guryev, Rob H. Henning

The paper identifies stage-specific transcriptional changes in garden dormouse cerebral cortex during hibernation phases, revealing metabolic and redox adaptations and a reversal during arousal.

bioRxiv · Mar 12, 2026 · PreprintMolecular Biology

Targeted inhibition of Bcl-xL following radiation reduces tumourigenesis in preclinical models of H3K27M-altered diffuse midline glioma

Ashley Vardon, Scott Haston, Romain Guiho, Diana Carvahlo, Rebecca Carter, Jessica K.R. Boult, Daniel Gharai, Diwakar Santhakumar, Ielyaas Cloete, James Gray, John Richard Apps, Olumide Kayode Ogunbiyi, Daohong Zhou, Guangrong Zheng, Ramón Martínez‐Máñez, , Juan Pedro Martı́nez-Barberá

This study shows that combining radiation with Bcl-xL inhibition reduces tumor growth in preclinical models of H3K27M-altered diffuse midline glioma.

bioRxiv · Dec 20, 2024 · PreprintCancer Biology

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain

Zizhen Yao, Cindy T. J. van Velthoven, Michael Kunst, Meng Zhang, Delissa McMillen, Changkyu Lee, Won Jung, Jeff Goldy, Aliya Abdelhak, Matthew Aitken, Katherine S. Baker, Pamela M. Baker, Eliza R. Barkan, Darren Bertagnolli, Ashwin A. Bhandiwad, , Xiaowei Zhuang

This paper creates a high-resolution transcriptomic and spatial cell type atlas of the whole adult mouse brain, revealing spatial organization and transcription factor codes for cell types.

Nature · Dec 13, 2023Peer-reviewedNeuroscience

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

Zizhen Yao, Cindy T. J. van Velthoven, Thuc Nghi Nguyen, Jeff Goldy, Adriana Estela Sedeño-Cortés, Fahimeh Baftizadeh, Darren Bertagnolli, Tamara Casper, Megan Chiang, Kirsten Crichton, Song‐Lin Ding, Olivia Fong, Emma J. Garren, Alexandra Glandon, Nathan W. Gouwens, , Hongkui Zeng

This study defines a comprehensive transcriptomic cell type taxonomy of the adult mouse isocortex and hippocampal formation using single-cell RNA-sequencing.

Cell · May 17, 2021Peer-reviewedNeuroscience