Author

Jiayi Duan

University of Pennsylvania

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:experimental assay· 1 Assay:metagenomics· 1

Frequent Co-Authors

Aaron T. TimpermaniD· 1 shared Ahmed M Moustafa· 1 shared Andrew D. MarquesiD· 1 shared Elizabeth Aine Fitts· 1 shared Frederic D. BushmaniD· 1 shared Haeun Karissa Lim· 1 shared Kyle L. BittingeriD· 1 shared Matthew HogenaueriD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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1 shared paperMicrobiology

Aaron T. TimpermanORCID

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1 paper

Recent·Most cited

MicrobiologymSystemsPeer-reviewedJun 2, 2026

Optimizing methods for virome analysis based on studies of a synthetic viral community

Jiayi Duan, Andrew D. Marques, Matthew Hogenauer…·Frederic D. Bushman

This paper evaluates virome analysis methods using a synthetic viral community, finding that VLP enrichment improves read yields and longer sequencing cycles enhance genome assembly.

DOI 10.1128/msystems.00188-26

metagenomicsexperimental assay