Andrew D. Marques

This paper evaluates virome analysis methods using a synthetic viral community, finding that VLP enrichment improves read yields and longer sequencing cycles enhance genome assembly.

The paper compares SARS-CoV-2 variants of concern in nasal and lung cultures, finding Omicron replicates fastest and Delta causes most cellular damage.

This paper uses machine learning to design AAV capsid sequences with high viability, introducing Origami for sequence optimization and evaluation.