DDA-BERT: leveraging transformer architecture pre-training for data-dependent acquisition mass spectrometry-based proteomics
A. S. Jun, Pu‐Kun Liu, Yingying Sun, Jiaying Lin, Xiaofan Zhang, Zongxiang Nie, Yuqi Zhang, Ziyuan Xing, Yi Chen, Tiannan Guo
DDA-BERT improves PSM rescoring in proteomics using a transformer-based model trained on 95 million human spectra, outperforming existing methods across species and sample types.
bioRxiv · Nov 13, 2024 · PreprintBioinformatics