Author

Ziyuan Xing

Westlake University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:deep learning· 2 Assay:metagenomics· 2 Assay:proteomics· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Tiannan GuoiD· 3 shared Yingying SuniD· 3 shared Ju‐Sheng ZhengiD· 2 shared Wenhao JiangiD· 2 shared Xue CaiiD· 2 shared Yuting XieiD· 2 shared Zelei MiaoiD· 2 shared A. S. Jun· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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3 shared papersMicrobiology

Tiannan GuoORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologyCell MetabolismPeer-reviewedMar 13, 2026

Population-based metaproteomics reveals functional associations between gut microbiota and phenotypes

Shuang Liang, Yingying Sun, Zelei Miao…·Tiannan Guo

This study uses population-based metaproteomics to identify functional associations between gut microbiota and 39 phenotypes, including 1,381 features related to Type 2 Diabetes.

7 citationstop 2%

humanmetagenomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 13, 2024

DDA-BERT: leveraging transformer architecture pre-training for data-dependent acquisition mass spectrometry-based proteomics

A. S. Jun, Pu‐Kun Liu, Yingying Sun…·Tiannan Guo

DDA-BERT improves PSM rescoring in proteomics using a transformer-based model trained on 95 million human spectra, outperforming existing methods across species and sample types.

1 citation

humanproteomics

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MicrobiologyMolecular & Cellular ProteomicsPeer-reviewedSep 13, 2024

metaExpertPro: a computational workflow for metaproteomics spectral library construction and data-independent acquisition mass spectrometry data analysis

Yingying Sun, Ziyuan Xing, Shuang Liang…·Tiannan Guo

metaExpertPro constructs metaproteomics spectral libraries and analyzes DIA-MS data, achieving high peptide quantification and low FDR in human fecal samples.

13 citations

humanmetagenomics

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