Author

Jongmin Baek

Harvard University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Neuroscience· 3 Bioengineering· 2 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 5 Organism:human· 4 Research Focus:cell type annotation· 3 Approach:large language model· 3 Organism:mouse· 3 Approach:statistical model· 3 Approach:transformer / foundation model· 3 Research Focus:benchmarking· 2

Frequent Co-Authors

Arnau Marin‐LlobetiD· 6 shared Jia Liu BiD· 6 shared Xinhe ZhangiD· 6 shared Almir AljovićiD· 5 shared Zuwan LiniD· 5 shared Ariel J. LeeiD· 4 shared Na LiiD· 4 shared Yichun HeiD· 4 shared

Activity by Year

2025-2026 · peak 5/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

6 shared papersNeuroscience

Arnau Marin‐LlobetORCID

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Growth-adaptive spring electronics for long-term, same-neuron mapping in the developing rat brain

Ariel J. Lee, Hao Sheng, Arnau Marin‐Llobet, Zheliang Wang, Jaeyong Lee, Ren Liu, Xinhe Zhang, Emma Hsiao, Jongmin Baek, Almir Aljović, Ding Liu, Yichun He, Nanshu Lu, Jia Liu B

This paper introduces growth-adaptive spring electronics and a spike processing pipeline to enable long-term, same-neuron mapping in developing rat brains, revealing neuron-specific developmental decorrelation.

bioRxiv · Feb 18, 2026 · PreprintBioengineering

DeviceAgent: An autonomous multimodal AI agent for flexible bioelectronics

Jaeyong Lee, Zuwan Lin, Wenbo Wang, Jongmin Baek, Ariel J. Lee, Almir Aljović, Arnau Marin‐Llobet, Xinhe Zhang, Ren Liu, Na Li, Jia Liu B

DeviceAgent is an AI agent that integrates LLMs and VLMs to automate bioelectronics research tasks, demonstrating capabilities in design, fabrication, defect inspection, and electrophysiological analysis.

bioRxiv · Oct 10, 2025 · PreprintBioengineering

An AI Agent for cell-type specific brain computer interfaces

Arnau Marin‐Llobet, Zuwan Lin, Jongmin Baek, Almir Aljović, Xinhe Zhang, Ariel J. Lee, Wenbo Wang, Jae Yong Lee, Hao Shen, Yichun He, Na Li, Jia Liu B

This paper introduces BCI-Agent, an AI framework that classifies neuronal cell types from electrophysiological data without fine-tuning, validated in rodent and human datasets.

bioRxiv · Sep 11, 2025 · PreprintNeuroscience

An autonomous AI agent for universal behavior analysis

Almir Aljović, Zuwan Lin, Wenbo Wang, Xinhe Zhang, Arnau Marin‐Llobet, Ningyue Liang, Bradley Canales, Jaeyong Lee, Jongmin Baek, Ren Liu, Catherine Li, Na Li, Jia Liu B

BehaveAgent automates cross-species behavior analysis from video input using multimodal AI without manual intervention or retraining, enabling zero-shot reasoning and end-to-end analysis.

bioRxiv · May 15, 2025 · PreprintNeuroscience

Spatial transcriptomics AI agent charts hPSC-pancreas maturation in vivo

Zuwan Lin, Wenbo Wang, Arnau Marin‐Llobet, Qifu Li, Samuel D. Pollock, Xin Sui, Almir Aljović, Jaeyong Lee, Jongmin Baek, Ningyue Liang, Xinhe Zhang, Connie Kangni Wang, Jiahao Huang, Mai Liu, Zihan Gao, , Jia Liu B

The paper introduces STAgent, an AI tool that automates spatial transcriptomics analysis, revealing in vivo maturation of human stem cell-derived pancreatic cells.

bioRxiv · Apr 1, 2025 · PreprintGenomics

Spike sorting AI agent

Zuwan Lin, Arnau Marin‐Llobet, Jongmin Baek, Yichun He, Jaeyong Lee, Wenbo Wang, Xinhe Zhang, Ariel J. Lee, Ningyue Liang, Jin Du, Jie Ding, Na Li, Jia Liu B

SpikeAgent automates spike sorting with a multimodal LLM-based AI agent, achieving curation consistency equal to or exceeding human experts and drastically reducing expertise barriers.

bioRxiv · Feb 11, 2025 · PreprintNeuroscience