Author

Jose Rodriguez

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:electronic health records· 1 Approach:experimental assay· 1 Research Focus:protein structure prediction· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Andrew L. JiiD· 1 shared Aubrey E. HouseriD· 1 shared Brian W. Ji· 1 shared Calina Glynn· 1 shared Cheryl Xiang· 1 shared Dan Shi· 1 shared Duilio Cascio· 1 shared Hannah Chae· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Andrew L. JiORCID

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2 papers

Recent·Most cited

Accurate and scalable demultiplexing of single-cell RNA sequencing using BEACON

Brian W. Ji, Marshall Lammers, Aubrey E. Houser, Nicholas Chan, Jose Rodriguez, Hannah Chae, Cheryl Xiang, Jack Bui, Hojun Li, Andrew L. Ji

BEACON improves demultiplexing accuracy in single-cell RNA sequencing by learning background counts, outperforming existing methods and enabling new biological insights.

bioRxiv · Sep 30, 2026 · PreprintBioinformatics

MicroED Structures from Micrometer Thick Protein Crystals

Michael W. Martynowycz, Calina Glynn, Jennifer Miao, M. Jason de la Cruz, Johan Hattne, Dan Shi, Duilio Cascio, Jose Rodriguez, Tamir Gonen

This study shows that MicroED can determine atomic resolution protein structures from crystals up to one micrometer thick, much thicker than previously thought possible.

bioRxiv · Jun 20, 2017 · PreprintBiochemistry