Author
University of California San Diego
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
3 papers
Recent·Most cited
Brian W. Ji, Marshall Lammers, Aubrey E. Houser…·Andrew L. Ji
BEACON improves demultiplexing accuracy in single-cell RNA sequencing by learning background counts, outperforming existing methods and enabling new biological insights.
Mayar Shahin, Brian W. Ji, Purushottam D. Dixit
EMBED is a dimensionality reduction method for microbiome studies that identifies ecological normal modes to capture community and individual taxa dynamics across longitudinal data.
Brian W. Ji, Ravi U. Sheth, Purushottam D. Dixit…·Dennis Vitkup
The paper introduces DIVERS, a method to quantify spatiotemporal dynamics and noise in microbiota abundances using replicate sampling and spike-in sequencing, applied to the human gut microbiome.