Author

Julia Matilainen

German PCH patient network (PCH-Familie e.V.), Boeblingen, Germany

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:imaging· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Francesco CastagnettiiD· 2 shared Simone MayeriD· 2 shared Theresa KagermeieriD· 2 shared Zeynep YenturiD· 2 shared Daria AndreevaiD· 1 shared Isabel Potthof· 1 shared Katharina BeckeriD· 1 shared Kensington Potter Stephens· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Francesco CastagnettiORCID

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2 papers

Recent·Most cited

Organotchi: an open-source tool for the automated segmentation, morphological characterization, and longitudinal tracking of organoids

Lizia Branco, Thomas Lautenschlager, Daria Andreeva, Zeynep Yentur, Francesco Castagnetti, Theresa Kagermeier, Isabel Potthof, Pierre Collignon, Kensington Potter Stephens, Julia Matilainen, Ralf Mikut, Simone Mayer

Organotchi automates segmentation and morphological analysis of neural organoids, quantifying features and tracking changes over time to improve quality assessment and downstream analysis.

bioRxiv · Nov 6, 2026 · PreprintBioinformatics

Comparing the impact of sample multiplexing approaches for single-cell RNA-sequencing on downstream analysis using cerebellar organoids

Kseniia Sarieva, Theresa Kagermeier, Vladislav G. Lysenkov, Francesco Castagnetti, Zeynep Yentür, Katharina Becker, Julia Matilainen, Nicolas Casadei, Simone Mayer

This study compares two single-cell RNA-sequencing multiplexing techniques, 10x and Parse, on cerebellar organoids, finding similar cellular diversity but differences in transcript capture and cell stress.

iScience · Jan 23, 2026Peer-reviewedGenomics