Author

June Qu

Carnegie Mellon University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Arkadiy I. GarberiD· 2 shared Catherine R. ArmbrusteriD· 2 shared A. Manna· 1 shared Brandon Wolk· 1 shared E. Kim· 1 shared Gustavo RamíreziD· 1 shared Ileana Pérez‐RodrígueziD· 1 shared Isabella A. VineyiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Arkadiy I. GarberORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BTEXgenie: A curated and user-friendly tool for profile HMM-based substrate-specific annotation of BTEX degradation genes

June Qu, Arkadiy I. Garber, Catherine R. Armbruster

BTEXgenie is a tool that uses profile HMMs to annotate BTEX degradation genes with higher sensitivity than existing methods, supporting pathway visualization and genomic analysis.

BMC Genomics · Sep 11, 2026Peer-reviewedBioinformatics

MagicLamp: a web server and software toolkit for targeted gene annotation of microbial functions

Arkadiy I. Garber, Isabella A. Viney, Nancy Merino, Gustavo Ramírez, Michael J. Pavia, Sean M. McAllister, Shiva Sadeghpour, A. Manna, Maya Kreger, Brandon Wolk, E. Kim, June Qu, Catherine R. Armbruster, Ileana Pérez‐Rodríguez

MagicLamp provides a toolkit and web server for targeted microbial function annotation using curated HMMs, enabling sensitive and specific gene annotation for specialized processes.

bioRxiv · Jul 22, 2026 · PreprintBioinformatics