Author

K. Avican

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:bacteria (other)· 2 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1

Frequent Co-Authors

A. Fahlgren· 2 shared A. K. M. F. Mahmud· 2 shared K. Nilsson· 2 shared M. Fällman· 2 shared R. Choudhury· 2 shared R. Navais· 2 shared D. K. Soni· 1 shared H. Wang· 1 shared

Activity by Year

2020-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersMicrobiology

A. Fahlgren

Mutual co-authors in cluster

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4 papers

Recent·Most cited

A core transcriptional response for biofilm formation by Y. pseudotuberculosis

A. K. M. F. Mahmud, K. Nilsson, D. K. Soni, R. Choudhury, R. Navais, S. Tuck, K. Avican, M. Faellman

This study identifies a core set of genes involved in biofilm formation by Y. pseudotuberculosis across different inducing conditions and shows their functional roles in biofilm development.

bioRxiv · Mar 11, 2022 · PreprintMicrobiology

Spatiotemporal Variations in Growth Rate and Virulence Plasmid Copy Number during Yersinia pseudotuberculosis Infection

S. Schneiders, T. Hechard, T. Edgren, K. Avican, M. Fällman, A. Fahlgren, H. Wang

This study uses ddPCR to analyze spatiotemporal variations in virulence plasmid copy number and growth rates of Yersinia pseudotuberculosis during mouse infection, showing adaptation to different microenvironments.

bioRxiv · Nov 4, 2020Microbiology

Genome-scale mapping reveals complex regulatory activities of RpoN in Yersinia pseudotuberculosis

A. K. M. F. Mahmud, K. Nilsson, A. Fahlgren, R. Navais, R. Choudhury, K. Avican, M. Fällman

This study maps RpoN's genome-wide regulatory activities in Yersinia pseudotuberculosis, revealing its role in virulence, biofilm formation, and gene regulation through binding sites and mutagenesis.

bioRxiv · Aug 19, 2020Microbiology

RNA Atlas of Human Bacterial Pathogens Uncovers Stress Dynamics Linked to Infection

K. Avican, J. Aldahdooh, M. Togninalli, J. Tang, K. M. Borgwardt, M. Rhen, M. Fallman

The paper constructs an RNA atlas of human bacterial pathogens under stress conditions, revealing common and unique stress responses and identifying novel non-coding RNAs.

bioRxiv · Jun 29, 2020Microbiology