Author

K. Davidsen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 3 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Organism:human· 3 Assay:proteomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:differential expression· 1

Frequent Co-Authors

L. B. Sullivan· 3 shared A. Aggarwal· 1 shared A.-L. B. G. Vigil· 1 shared E. Quon· 1 shared F. Matsen· 1 shared I. A. Engstrom· 1 shared J. S. Marvin· 1 shared M. L. Hart· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersBiochemistry

L. B. Sullivan

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Author profile →

4 papers

Recent·Most cited

A robust method for measuring aminoacylation through tRNA-Seq

K. Davidsen, L. B. Sullivan

This paper introduces an optimized tRNA-Seq method for precise and accurate tRNA charge measurement, scalable to hundreds of samples with accompanying software.

bioRxiv · Jul 31, 2023Biochemistry

An engineered biosensor enables dynamic aspartate measurements in living cells

K. Davidsen, J. S. Marvin, A. Aggarwal, T. A. Brown, L. B. Sullivan

This paper develops a GFP-based biosensor to dynamically measure aspartate levels in living cells, showing it correlates with mass spectrometry measurements and detects temporal changes in aspartate concentration.

bioRxiv · Jun 27, 2023Biochemistry

Mitochondrial Redox Adaptations Enable Aspartate Synthesis in SDH-deficient Cells

M. L. Hart, E. Quon, A.-L. B. G. Vigil, I. A. Engstrom, O. J. Newsom, K. Davidsen, P. Hoellerbauer, S. M. Carlisle, L. B. Sullivan

This study shows that SDH-deficient cells can restore aspartate synthesis and proliferation by inhibiting complex I, driven by mitochondrial redox changes.

bioRxiv · Mar 14, 2022Biochemistry

Benchmarking tree and ancestral sequence inference for B cell receptor sequences

K. Davidsen, F. Matsen

This study benchmarks classical and B cell-specific phylogenetic tools on simulated and real B cell receptor sequences to assess their performance in tree structure and ancestral sequence inference.

bioRxiv · Apr 25, 2018Immunology