Author
University of California San Diego
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
8 papers
Recent·Most cited
Nikita Levin, Daniel A. Polasky, Kai Li, Alexey I. Nesvizhskii, Shabaz Mohammed
The paper evaluates photon- and electron-based fragmentation methods for glycopeptide analysis using Omnitrap-LCMS, finding UVPD and EID provide detailed structural information comparable to traditional methods.
Analytical Chemistry · Jun 26, 2026Peer-reviewedSystems Biology
Wubin Ding, Amit Klein, Cindy Tatiana Báez-Becerra, Jonathan A. Rink, Anna Bartlett, Ruoxuan Wang, Qiurui Zeng, Rosa Castanon, Joseph R. Nery, Emma Osgood, William S. Owens, Alaina Petrella, Chumo Chen, Andrea Saldana Acerbo, Ariana S. Barcoma, , Joseph R. Ecker
This paper creates a multimodal single-cell atlas of the human basal ganglia, revealing epigenomic and 3D genome features across cell types and linking them to disease-associated genetic risk.
bioRxiv · Jun 23, 2026 · PreprintNeuroscience
Kai Li, Junhui Mou, Xiaohan Sun, Yuanyuan Chen, Lin Fu, Zhuang Wang, Yaru Wei, Mengdi Wang, Peng Guo, Xiaolin Lin, Liang Wang, Shumin Duan, Stephen D. Liberles, Jinfei D Ni
This study creates a single-cell atlas of the murine enteric nervous system, identifies molecularly defined IPANs, and shows their role in nutrient detection and gut motility regulation.
bioRxiv · Mar 7, 2026 · PreprintNeuroscience
Zhuang Wang, Qihong Tang, Kai Li, J. Li, Junhui Mou, Xiaohan Sun, Yujing Wei, Yuehua Chen, Peng Guo, Lei Jin, Benlong Liu, Bailong Xiao, Shumin Duan, Wei Dai, Jinfei D Ni
The paper identifies cell-type-specific vagal and enteric circuits that control meal-induced gastric secretion and shows segregation of secretory and motor functions.
bioRxiv · Mar 4, 2026 · PreprintNeuroscience
Lei Chang, Kai Li, Yang Xie, Guojie Zhong, Jonathan A. Rink, Cindy Tatiana Báez-Becerra, Anita Lie, Hannah S. Indralingam, Keyi Dong, Timothy H. Loe, Zhaoning Wang, Songpeng Zu, Joseph Colin Kern, Zoey Zhao, Eric Boone, , Bing Ren
This paper presents a single-cell multiome atlas of the human basal ganglia, linking chromatin states and transcriptomes to cell-type identity and disease-associated variants.
bioRxiv · Feb 4, 2026 · PreprintGenomics
Yang Xie, Lei Chang, Guojie Zhong, Jonathan A. Rink, Tatiana Baez-Becerra, Ethan J. Armand, Wubin Ding, Kai Li, Éric Bonne, Anita Lie, Hannah S. Indralingam, Keyi Dong, Timothy H. Loe, Bohan Huang, Zhaoning Wang, , Bing Ren
The paper creates a single-cell atlas of transcription and chromatin states in the human brain, identifying regulatory programs and linking them to neuropsychiatric disorders.
bioRxiv · Feb 3, 2026 · PreprintGenomics
Wenjin Zhang, Wubin Ding, Kai Li, Lei Chang, Amit Klein, Cindy Tatiana Báez-Becerra, Jonathan A. Rink, Anna Bartlett, Huaming Chen, Natalie M. Schenker-Ahmed, Nelson Johansen, Tyler S. Mollenkopf, Yuanyuan Fu, Xie Yang, Shane Liu, , Daofeng Li
The paper presents an integrated single-cell and epigenomic resource for exploring basal ganglia datasets across species, enabling multi-omics and comparative analysis.
bioRxiv · Feb 2, 2026 · PreprintGenomics
KAI LI, Andrew J. Black, Tea Knežević, Jennifer Margaret Gardner, JIN ZHANG, Vladimir Jiranek, J. E. F. Green, Benjamin James Binder, Alexander Tam
The paper models spiral colony morphology in yeast using an agent-based model and Bayesian inference to infer hyphal growth parameters.
The ANZIAM Journal · Jan 1, 2026Peer-reviewedMicrobiology