Author

Krisha McKee

National Institutes of Health

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:host-pathogen & immune response· 1 Approach:machine learning (classical)· 1 Assay:protein sequence· 1

Frequent Co-Authors

Nicole A. Doria-RoseiD· 3 shared Reda RawiiD· 3 shared Tongqing ZhouiD· 3 shared Baoshan ZhangiD· 2 shared Chen‐Hsiang SheniD· 2 shared John R. MascolaiD· 2 shared Lawrence S. ShapiroiD· 2 shared Peter D. KwongiD· 2 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Nicole A. Doria-RoseORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Vaccine Elicitation of HIV-1 Neutralizing Antibodies Against Both V2 Apex and Fusion Peptide in Rhesus Macaques

Hongying Duan, Joseph P. Nkolola, Shuishu Wang, Jayeshbhai Chaudhari, I‐Ting Teng, Christy L. Lavine, Danealle K. Parchment, George S. Sellers, Krisha McKee, Sijy J. O'Dell, Misook Choe, Haijuan Du, Baoshan Zhang, Alejandro A. Espinosa Perez, Annika Rössler, , Dan H. Barouch

This study designs a dual-epitope vaccine targeting HIV-1 Env's fusion peptide and V2 apex, showing it elicits neutralizing antibodies against both sites in rhesus macaques.

Cell Reports · Jan 29, 2026Peer-reviewedImmunology

BRAVE: a highly accurate method for predicting HIV-1 antibody resistance using large language models for proteins

Mohammed El Anbari, Tatsiana Bylund, Sijy J. O'Dell, Emily Tourtellott‐Fogt, Krisha McKee, Stephen D. Schmidt, Nonhlanhla N. Mkhize, Penny L. Moore, Nicole A. Doria‐Rose, Tongqing Zhou, Reda Rawi

BRAVE predicts HIV-1 resistance to 33 bNAbs using a Random Forests classifier with a protein language model, outperforming existing tools in accuracy and other metrics.

bioRxiv · Jul 28, 2025 · PreprintBioinformatics

Structural survey of HIV-1-neutralizing antibodies targeting Env trimer delineates epitope categories and suggests vaccine templates

Gwo‐Yu Chuang, Jing Zhou, Reda Rawi, Chen‐Hsiang Shen, Zizhang Sheng, Anthony P. West, Baoshan Zhang, Tongqing Zhou, Robert T. Bailer, Nicole A. Doria‐Rose, Mark K. Louder, Krisha McKee, John R. Mascola, Pamela J. Björkman, Lawrence S. Shapiro, Peter D. Kwong

The paper analyzes HIV-1 broadly neutralizing antibodies to classify epitopes and identify potential vaccine candidates based on structural and immunological features.

bioRxiv · May 2, 2018 · PreprintBioinformatics