Author

Kurt LaButti

Lawrence Berkeley National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Ecology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:development & morphogenesis· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Alex CopelandiD· 1 shared Andrea Patrigniani· 1 shared Anna LipzeniD· 1 shared Arun N. Prasanna· 1 shared Asif Khalak· 1 shared Balázs BálintiD· 1 shared Bettina Bóka· 1 shared Brian FosteriD· 1 shared

Activity by Year

2015-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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1 shared paperEcology

Alex CopelandORCID

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Author profile →

3 papers

Recent·Most cited

Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle:High-Resolution Sampling Every 4 Hours Over 22 Days

Brook L. Nunn, Emma Timmins‐Schiffman, Miranda C. Mudge, Deanna L. Plubell, Gabriella Chebli, Julia Kubanek, Michael E. Riffle, William Stafford Noble, Elizabeth L. Harvey, Tasman A. Nunn, Tatiana Rynearson, Marcel Huntemann, Kurt LaButti, Brian Foster, Bryce Foster, , Emiley A. Eloe‐Fadrosh

The paper describes a high-resolution microbial metagenome dataset collected over 22 days during a phytoplankton bloom cycle, including gene abundances and time-matched environmental data.

Scientific Data · Nov 22, 2024Peer-reviewedEcology

Genome expansion and lineage-specific genetic innovations in the world’s largest organisms (Armillaria)

György Sipos, Arun N. Prasanna, Mathias C. Walther, Eoin O’Connor, Balázs Bálint, Krisztina Krizsán, Brigitta Kiss, Jaqueline Hess, Torda Varga, Jason Slot, Robert Riley, Bettina Bóka, Daniel Rigling, Kerrie Barry, Juna Lee, , László G Nagy

This study sequenced four Armillaria genomes and analyzed gene expression and proteomics to identify genetic innovations linked to their pathogenicity and rhizomorph development.

bioRxiv · Jul 20, 2017 · PreprintEvolutionary Biology

FinisherSC : A repeat-aware tool for upgrading de-novo assembly using long reads

Ka Kit Lam, Kurt LaButti, Asif Khalak, David Tse

FinisherSC improves de-novo assembly using long reads by addressing repeats, producing longer and higher quality contigs with high concordance.

Bioinformatics · Jun 3, 2015Peer-reviewedBioinformatics