Author

Liam Gonzalez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:large language model· 1 Organism:multiple species· 1 Organism:plant (other)· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Bernardo P. de AlmeidaiD· 2 shared Evan Trop· 2 shared Hugo Dalla-Torre· 2 shared Javier Mendoza‐RevillaiD· 2 shared Karim BeguiriD· 2 shared Marcin J. SkwarkiD· 2 shared Nicolás López CarranzaiD· 2 shared Thomas PierrotiD· 2 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Bernardo P. de AlmeidaORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Hugo Dalla-Torre, Liam Gonzalez, Javier Mendoza‐Revilla, Nicolás López Carranza, Adam Grzywaczewski, Francesco Oteri, Christian Dallago, Evan Trop, Bernardo P. de Almeida, Hassan Sirelkhatim, Guillaume Richard, Marcin J. Skwark, Karim Beguir, M. Lopez, Thomas Pierrot

The paper introduces the Nucleotide Transformer, a foundation model for genomics, showing it can predict molecular phenotypes from DNA sequences with transfer learning across tasks and organisms.

Nature Methods · Nov 28, 2024Peer-reviewedGenomics

A Foundational Large Language Model for Edible Plant Genomes

Javier Mendoza‐Revilla, Evan Trop, Liam Gonzalez, Maša Roller, Hugo Dalla-Torre, Bernardo P. de Almeida, Guillaume Richard, Jonathan Caton, Nicolás López Carranza, Marcin J. Skwark, Alexandre Laterre, Karim Beguir, Thomas Pierrot, Marie Lopez

This paper introduces a large language model for plant genomics that provides state-of-the-art predictions for regulatory annotations and variant prioritization, along with a benchmark dataset for deep learning methods.

Communications Biology · Jul 9, 2024Peer-reviewedGenomics