multiple species

The paper uses ocean current models to predict genomic diversity patterns in coastal species, finding that lineage source regions (LSRs) better explain genetic structure than isolation-by-distance.

CoReg is a motion correction tool for in vivo calcium imaging that outperforms existing methods by using tracking-based registration.

This study identifies a neurohormonal pathway in ants where caregiver genotype affects larval body size and caste fate by modulating ecdysteroid production and lipid metabolism.

The paper uses genomic data from sea lions to investigate sex-biased dispersal and reproductive skew, finding male-biased migration and varying levels of polygyny between species.

The paper uses sequence-to-function models to show that long-range regulatory information in vertebrate genomes stops being shared before local sequence information, with a phylogenetic boundary around 320-435 Mya.

The paper identifies a Y-specific translocated gsdf copy as the master sex-determining gene in common dab through genome sequencing and comparative analysis.

The paper identifies HELM, a LOV-domain protein essential for phototaxis in brown algae, and shows its role in light-directed movement and flagellar fluorescence.

This study examines sleep architecture differences between Heliconius melpomene and Dryas iulia, linking them to variations in memory investment.

This study characterizes the structural evolution of Fcα/μR-mediated antibody recognition across vertebrates by analyzing duck and mouse Fc/R interactions with IgM and IgA.

HomoeoGWAS identifies homoeolog-group interactions in allopolyploid crops by analyzing genotype encodings and controlling family-wise error across multiple species.

This study investigates how varying iron levels in diets affect the nutritional profile and microbiome of house crickets, finding that high iron increases their iron content without altering microbial diversity.

The paper investigates phenotypic differences associated with mitochondrial haplotypes in three-spined stickleback, finding effects on male gonadosomatic index and potential citrate synthase activity.

This study traces the evolutionary histories of human cholinergic proteins across eukaryotes using phylogenomic analysis, revealing heterogeneous patterns and phylogenetic relationships.

The paper analyzes molecular and morphological evolution rates across eukaryotes and finds little correlation between them, suggesting distinct evolutionary drivers at genomic and phenotypic levels.

The paper uses fibroblasts from 86 mammalian species to study virus-host susceptibility and innate immune responses across diverse mammals.

QUANTA uses quantum annealing to improve species tree estimation from multi-locus data, achieving comparable accuracy to classical methods with significant speedup.

GPBench provides a standardized benchmark framework for genomic prediction, evaluating 21 models across 16 species and offering tools for analysis and comparison.

The paper assesses chemical pollution and ecotoxicological risks in Caribbean coastal bays and coral reefs using chemical analysis and bioassays, finding that bays act as pollution sources while reefs show mixture toxicity.

This study shows arginine activates a conserved sphingolipid pathway in insects, promoting antibacterial effects through ceramide accumulation, independent of classical immune responses.

This study compares epigenomic signatures of longevity between a giant tortoise and humans, finding shared methylation patterns linked to telomere biology.

Roost compiles avian influenza host genomics data and links species, genes, and mechanisms to evidence, highlighting gaps in research coverage.

This study investigates visual plasticity in surgeonfishes by analyzing opsin gene expression across 22 species, revealing a deep phylogenetic split in visual systems that predates ecological diversification.

This study identifies NRT2.2 as the primary nitrate transporter in Nannochloropsis oceanica and shows its critical role in nitrate uptake and carbon-nitrogen balance.

HYphlow streamlines phylogenetic selection analyses by integrating data preparation, foreground assignment, HyPhy execution, and result extraction into a single workflow, improving precision and reproducibility.

FedEpitope uses federated learning with LoRA to predict linear B-cell epitopes without centralizing data, achieving good performance across multiple clients.

The paper shows guide-tree bias in whole-genome alignment can mislead phylogenomic analyses and proposes a consensus alignment strategy to reduce this bias.

The paper reanalyzes transcriptomic data to show that biochar exposure primes Formica japonica ants epigenetically, enhancing their resilience to environmental stressors.

The paper develops and validates a questionnaire to assess sensory processing sensitivity in horses, identifying two key dimensions and demonstrating its reliability and unique explanatory power for behavior.

This study evaluates clove oil as an alternative euthanasia method for four ornamental fish species, finding it unsuitable for goldfish and Midas cichlid due to unreliable effects and severe gill damage.

This study identifies CYP123 as a key enzyme in mycobacterial lanosterol catabolism, showing it works with CYP51 to oxidize C14-demethylated sterols, expanding the known sterol utilization beyond cholesterol.