scDNAm-GPT Captures Genome-wide CpG Dependencies in Single-cell DNA methylomes to Revolutionize Epigenetic Analysis
Chaoqi Liang, Peng Ye, Hongliang Yan, Peng Zheng, Jianle Sun, Yanni Wang, Yu Li, Yuchen Ren, Yuanpei Jiang, Ran Wei, Junjia Xiang, Sizhe Zhang, Linle Jiang, Weiqiang Bai, Xinzhu Ma, , Jia Li
scDNAm-GPT is a foundation model for single-cell DNA methylation analysis that improves clustering, trajectory inference, and deconvolution using context-aware tokenization and attention mechanisms.
bioRxiv · Feb 19, 2025 · PreprintBioinformatics