Author

Liuliu Pan

Nanostring Technologies (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 2 Cancer Biology· 1 Developmental Biology· 1 Neuroscience· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 7 Assay:spatial transcriptomics· 7 Approach:statistical model· 7 Research Focus:differential expression· 5 Research Focus:gene regulatory network inference· 4 Assay:proteomics· 4 Research Focus:cell type annotation· 3 Research Focus:cell-cell communication· 3

Frequent Co-Authors

Andy NamiD· 5 shared Arutha KulasingheiD· 4 shared Cleber Machado-SouzaiD· 3 shared Fernando Souza-Fonseca-GuimarãesiD· 3 shared Gabrielle Therese BelziD· 3 shared James H. MonkmaniD· 3 shared Jason ReevesiD· 3 shared Joseph BeechemiD· 3 shared

Activity by Year

2021-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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5 shared papersBioinformatics

Andy NamORCID

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Author profile →

8 papers

Recent·Most cited

SM3DD with Segmented PCA: A Comprehensive Method for Interpreting 3D Spatial Transcriptomics

Tony Blick, Aaron Kilgallon, James H. Monkman, Caroline Louise Cooper, Chin Wee Tan, Emily E. Killingbeck, Liuliu Pan, Youngmi Kim, Yan Liang, Andy Nam, Michael Leon, Paulo S F Guimaraes, Seigo Nagashima, Ana PC Martins, Cleber Machado-Souza, , Arutha Kulasinghe

The paper introduces SM3DD, a 3D spatial transcriptomics analysis method, and finds differences in transcript distances between normal and SARS-CoV-2 patient lung tissues.

NAR Genomics and Bioinformatics · Jan 6, 2026Peer-reviewedBioinformatics

Integrating 12 Spatial and Single Cell Technologies to Characterise Tumour Neighbourhoods and Cellular Interactions in three Skin Cancer Types

P. Prakrithi, Laura F. Grice, Feng Zhang, Levi Hockey, Samuel X. Tan, Xiao Tan, Zherui Xiong, Onkar Mulay, Andrew Causer, Andrew Newman, Duy Pham, Guiyan Ni, Zewen Kelvin Tuong, Xinnan Jin, Eun Ju Kim, , Quan Hoang Nguyen

The paper integrates 12 spatial and single-cell technologies to analyze cellular interactions and signatures in three skin cancers, identifying key therapeutic targets and genetic associations.

bioRxiv · Jul 25, 2025 · PreprintCancer Biology

The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs

Jiwoon Park, Roberto De Gregorio, Erika Hissong, Elif Ozcelik, Nicholas Bartelo, Felipe Segato Dezem, Luke Zhang, Maycon Marção, Hannah Chasteen, Yimin Zheng, Ernesto Abila, Junbum Kim, Theodore M. Nelson, Jacqueline Proszynski, Akua A. Agyemang, , Christopher E. Mason

SAHA creates a multimodal, subcellular-resolution reference atlas of healthy human tissues, revealing spatial organization and disease-associated disruptions across multiple organ systems.

bioRxiv · Jun 16, 2025 · PreprintSystems Biology

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

Yered H. Pita-Juárez, Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni Marie Delorey, Adam L. Essene, Olga Rachel Brook, Deepti B. Pant, Disha Skelton-Badlani, Pourya Naderi Yeganeh, Pinzhu Huang, Liuliu Pan, TYLER D. HETHER, Tallulah S. Andrews, , Ioannis S. Vlachos

This study creates a single-nucleus and spatial transcriptomic atlas of the COVID-19 liver, revealing cellular and functional disruptions associated with organ damage.

Genome biology · Mar 14, 2025Peer-reviewedGenomics

Whole transcriptome profiling of placental pathobiology in SARS-CoV-2 pregnancies identifies placental dysfunction signatures

Nataly Stylianou, Ismail Sebina, Nicholas Matigian, James H. Monkman, Hadeel Doehler, Joan Röhl, Mark C. Allenby, Andy Nam, Liuliu Pan, Anja Rockstroh, Habib Sadeghirad, Kimberly Chung, Thais Sobanski, Kenneth John O'Byrne, Ana Clara Simoes Florido Almeida, , Arutha Kulasinghe

This study uses spatial transcriptomics to identify placental dysfunction signatures in SARS-CoV-2 infected pregnancies, revealing altered gene expression related to hypoxia, oxidative stress, and preeclampsia-like pathways.

Clinical & Translational Immunology · Jan 1, 2024Peer-reviewedDevelopmental Biology

A robust Platform for Integrative Spatial Multi-omics Analysis to Map Immune Responses to SARS-CoV-2 infection in Lung Tissues

Xiao Tan, Laura F. Grice, Minh Tran, Onkar Mulay, James H. Monkman, Tony Blick, Tuan Vo, Ana Clara Almeida, Jarbas da Silva Motta, Karen Fernandes de Moura, Cleber Machado Souza, Paulo Souza‐Fonseca‐Guimaraes, Cristina Pellegrino Baena, Lúcia de Noronha, Fernanda Simoes Fortes Guimaraes, , Quan Hoang Nguyen

This paper develops a spatial multi-omics platform to analyze immune responses in SARS-CoV-2-infected lung tissues, revealing macrophage infiltration and spatial heterogeneity in cytokine and interferon signaling.

Immunology · Aug 21, 2023Peer-reviewedBioinformatics

Spatial Analysis of Neural Cell Proteomic Profiles following Ischemic Stroke in Mice using High-Plex Digital Spatial Profiling

Jessica M. Noll, Catherine J. Augello, Esra Kürüm, Liuliu Pan, Anna Pavenko, Andy Nam, Byron D. Ford

This study uses spatial proteomic profiling to analyze ischemic stroke effects in mice, identifying distinct proteomic changes in different brain regions.

Molecular Neurobiology · Sep 23, 2022Peer-reviewedNeuroscience

A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2

Toni Marie Delorey, Carly G.K. Ziegler, Graham Heimberg, Rachelly Normand, Yiming Yang, Åsa Segerstolpe, Domenic Abbondanza, Stephen J. Fleming, Ayshwarya Subramanian, Daniel T. Montoro, Karthik A. Jagadeesh, Kushal K. Dey, Pritha Sen, Michal Slyper, Yered H. Pita-Juárez, , Alexandra–Chloé Villani

This study creates a single-cell and spatial atlas of autopsy tissues from COVID-19 patients, revealing altered cellular responses and potential therapeutic targets.

bioRxiv · Feb 25, 2021 · PreprintGenomics