Author

Andrew Newman

The University of Queensland

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:spatial transcriptomics· 3 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Hani VuiD· 3 shared Quan Hoang NguyeniD· 3 shared Tuan VoiD· 3 shared Andrew CauseriD· 2 shared Jazmina L. Gonzalez CruziD· 2 shared P. PrakrithiiD· 2 shared Xiao TaniD· 2 shared Zherui XiongiD· 2 shared

Activity by Year

2022-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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3 shared papersCancer Biology

Hani VuORCID

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Author profile →

4 papers

Recent·Most cited

SpaMTP: Integrative Statistical Analysis and Visualisation of Spatial Metabolomics and Transcriptomics data.

Andrew Causer, Tianyao Lu, Jurgen Kriel, Joel J D Moffet, Christopher C. J. Fitzgerald, Andrew Newman, Hani Vu, Xiao Tan, Tuan Vo, Cedric S. Cui, Vinod K. Narayana, James Richard Whittle, Sarah A. Best, Saskia Freytag, Quan Hoang Nguyen

SpaMTP integrates spatial metabolomics and transcriptomics data through a comprehensive analysis pipeline and visualization tools.

Nature Methods · Jul 31, 2026Peer-reviewedBioinformatics

Unraveling lncRNA Diversity at a Single Cell Resolution and in a Spatial Context across Different Cancer Types

P. Prakrithi, Tuan Vo, Zherui Xiong, Hani Vu, Loan T Nguyen, Andrew Newman, Julie Wilhelmey, Vicki Whitehall, Jazmina L. Gonzalez Cruz, Simon Wood, Andrew John Mallett, Ishaan Gupta, Quan Hoang Nguyen

The paper identifies 354,937 novel lncRNAs across 13 cancer types using single-cell and spatial transcriptomics, revealing their cell-type specificity, spatial distribution, and potential functional roles.

Nature Methods · May 14, 2026Peer-reviewedCancer Biology

Integrating 12 Spatial and Single Cell Technologies to Characterise Tumour Neighbourhoods and Cellular Interactions in three Skin Cancer Types

P. Prakrithi, Laura F. Grice, Feng Zhang, Levi Hockey, Samuel X. Tan, Xiao Tan, Zherui Xiong, Onkar Mulay, Andrew Causer, Andrew Newman, Duy Pham, Guiyan Ni, Zewen Kelvin Tuong, Xinnan Jin, Eun Ju Kim, , Quan Hoang Nguyen

The paper integrates 12 spatial and single-cell technologies to analyze cellular interactions and signatures in three skin cancers, identifying key therapeutic targets and genetic associations.

bioRxiv · Jul 25, 2025 · PreprintCancer Biology

De novo assembly and annotation of the Patagonian toothfish (Dissostichus eleginoides) genome

David Ryder, David Stone, Diana Minardi, Ainsley Riley, Justin Avant, Lisa Jane Cross, Marta Söffker, Deborah Davidson, Andrew Newman, Peter Campbell Thomson, Chris Darby, Ronny van Aerle

The paper presents a high-quality genome assembly and annotation for the Patagonian toothfish, revealing insights into its genetic makeup and absence of anti-freeze glycoprotein coding sequences.

bioRxiv · Dec 15, 2022 · PreprintGenomics