Exploring protein-mediated compaction of DNA by coarse-grained simulations and unsupervised learning
M. de Jager, P. J. Kolbeck, W. Vanderlinden, J. Lipfert, L. Filion
The paper uses coarse-grained simulations and unsupervised learning to study protein-mediated DNA compaction, finding that protein-protein interactions are critical for forming looped structures observed experimentally.
bioRxiv · Mar 28, 2024Biophysics