Author

M. Keeling

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Research Focus:transcription & RNA processing· 1

Frequent Co-Authors

X. Didelot· 3 shared J. Carson· 2 shared A. Ledda· 1 shared D. Helekal· 1 shared D. Wyllie· 1 shared L. Ferretti· 1 shared P. Ribeca· 1 shared Y. H. Grad· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 14 mutual co-author links

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3 shared papersEvolutionary Biology

X. Didelot

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Inference of infectious disease transmission using multiple genomes per host

J. Carson, M. Keeling, D. Wyllie, P. Ribeca, X. Didelot

This paper introduces a method to infer infectious disease transmission networks using multiple genomes per host, showing improved accuracy with more genomes and applying it to real outbreaks.

bioRxiv · Jul 28, 2023 · PreprintMicrobiology

Estimating the fitness cost and benefit of antimicrobial resistance from pathogen genomic data

D. Helekal, M. Keeling, Y. H. Grad, X. Didelot

This paper estimates the fitness cost and benefit of antimicrobial resistance using genomic data from Neisseria gonorrhoeae, showing that fluoroquinolone resistance could be safely used in a minority of cases.

bioRxiv · Dec 2, 2022Evolutionary Biology

The bounded coalescent model: conditioning a genealogy on a minimum root date

J. Carson, A. Ledda, L. Ferretti, M. Keeling, X. Didelot

The paper introduces a new algorithm for simulating the bounded coalescent model directly, showing improved computational efficiency and providing methods to calculate probabilities under this model.

bioRxiv · Jan 4, 2022Evolutionary Biology