Author

Marc J. Prindle

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:long-read sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Anasha Arryman· 2 shared Cynthia Cech· 2 shared Kendall Berg· 2 shared Lacey McGee· 2 shared Mark S. Kokoris· 2 shared Megan Rogers-Peckham· 2 shared Melud Nabavi· 2 shared Salka Barrett· 2 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenetics

Anasha Arryman

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2 papers

Recent·Most cited

Scalable single-cell isoform profiling with sequencing-by-expansion

Christophe H. Georgescu, Ghamdan Al‐Eryani, Allison Brookhart, Jagdeesh Chandrasekar, Stephanie J. Yaung, Megan Rogers-Peckham, Megan Freer, Michael E. Kartje, Houlin Yu, Akanksha Khorgade, Charlotte Yang, Lacey McGee, Kendall Berg, Cynthia Cech, Salka Barrett, , Aziz M. Al’Khafaji

This paper introduces a high-throughput single-cell RNA isoform sequencing method using sequencing-by-expansion (SBX) and the CUDLL algorithm, achieving high accuracy and enabling isoform-level analysis across cell types.

bioRxiv · Jul 28, 2026 · PreprintGenetics

Sequencing by Expansion (SBX) -- a novel, high-throughput single-molecule sequencing technology

Mark S. Kokoris, Robert N. McRuer, Melud Nabavi, Aaron Jacobs, Marc J. Prindle, Cynthia Cech, Kendall Berg, Taylor Lehmann, Cara Machacek, John C. Tabone, Jagadeeswaran Chandrasekar, Lacey McGee, Matthew Lopez, Tommy Reid, Cara Williams, , Matthew Corning

This paper introduces SBX, a single-molecule sequencing technology that improves nanopore sequencing accuracy and scalability by encoding DNA into Xpandomers with high signal-to-noise reporter codes.

bioRxiv · Feb 19, 2025 · PreprintGenomics