Author

Mark Thompson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:genome assembly· 1 Organism:multiple species· 1 Research Focus:software / tool· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alejandra Gonzalez-BeltraniD· 1 shared Andrew I. Su· 1 shared Benjamin M. Good· 1 shared Eelke van der Horst· 1 shared Erik Schultes· 1 shared Farzin Ahmed· 1 shared Jun Zhao· 1 shared Kenneth Huellas-Bruskiewicz· 1 shared

Activity by Year

2015-2016 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperScientific Communication & Education

Alejandra Gonzalez-BeltranORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Knowledge.Bio: A Web application for exploring, building and sharing webs of biomedical relationships mined from PubMed

Richard Bruskiewich, Kenneth Huellas-Bruskiewicz, Farzin Ahmed, Rajaram Kaliyaperumal, Mark Thompson, Erik Schultes, Kristina M. Hettne, Andrew I. Su, Benjamin M. Good

Knowledge.Bio provides a web platform for exploring and building biomedical relationship networks from PubMed literature using text-mined data.

bioRxiv · May 26, 2016 · PreprintBioinformatics

From peer-reviewed to peer-reproduced: a role for data standards, models and computational workflows in scholarly publishing

Alejandra Gonzalez-Beltran, Peter Li, Jun Zhao, Maria Susana Avila-Garcia, Marco Roos, Mark Thompson, Eelke van der Horst, Rajaram Kaliyaperumal, Ruibang Luo, Tin-Lap Lee, Tak-wah Lam, Scott C. Edmunds, Susanna-Assunta Sansone, Philippe Rocca-Serra

Galaxy workflows reproduced SOAPdenovo2 bacterial assembly results almost exactly, while ISA, Nanopublication and Research Object models exposed reporting errors leading to a published correction.

PLOS ONE · Jul 8, 2015Peer-reviewedScientific Communication & Education✦ In-depth digest