Author

Matthew Thomas

Boehringer Ingelheim Pharma GmbH & Co. KG, Department Immunology and Respiratory Disease research, Birkendorfer Strasse 65, 88397 Biberach an der Riss, Germany;Primary ORCID profile (0009-0005-0251-9150 · 3 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Matthew ThomasiD3 papers · Yale University

Biology Disciplines

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Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:imaging· 1

Frequent Co-Authors

Adam SzmuliD· 1 shared Aiman Alzetani· 1 shared Andres F. Vallejo· 1 shared Artur P. KaczmarczykiD· 1 shared Aurelie Fabre· 1 shared Ben G. Marshall· 1 shared Chris A. BrackleyiD· 1 shared Christian H. Ottensmeier· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperSystems Biology

Adam SzmulORCID

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2 papers

Recent·Most cited

Three-dimensional mapping of human lung fibrosis identifies spatial coupling between tissue microarchitecture and maladaptive repair states

Joseph A. Bell, Stephanie K. Robinson, Robert Pedley, Gautam Ahuja, Adam Szmul, Ian Reddin, Jaya Thomas, Jeanette Norman, Sonya James, Philip J. Basford, Victor Barozi, Dipanjan Bhattacharya, James G. H. Parkin, Rebekah Allen, Lucy N. Sayer, , Mark G. Jones

This study maps human lung fibrosis in 3D, showing how structural changes in tissue microarchitecture drive maladaptive repair states and disease progression.

bioRxiv · Nov 8, 2026 · PreprintSystems Biology

Irregular nucleosome positioning governs a crystalline to liquid-like phase transition and tunes chromatin accessibility

Waad Albawardi, Matthew Thomas, Gert-Jan Kuijntjes, Hannah Amy Wheeldon, Artur P. Kaczmarczyk, James Allan, James Ding, Michael Chiang, Willem Vanderlinden, John van Noort, Davide Marenduzzo, Chris A. Brackley, Nick Gilbert

The paper shows that nucleosome positioning determines chromatin's physical state, with irregular positioning enabling accessibility for transcription while maintaining genome protection.

bioRxiv · Aug 25, 2026 · PreprintMolecular Biology