Author

Natalie Solonenko

The Ohio State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 2 Genomics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:bacteria (other)· 2 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Matthew B. SullivaniD· 4 shared Christine L SuniD· 2 shared Adriana AlbertiiD· 1 shared Alexander Loy· 1 shared Andrew J. Mulholland· 1 shared Ann GregoryiD· 1 shared Anna I. MackeyiD· 1 shared Ashley R. CoeneniD· 1 shared

Activity by Year

2016-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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4 shared papersGenomics

Matthew B. SullivanORCID

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Author profile →

5 papers

Recent·Most cited

Density-dependent feedback and higher-order interactions enable coexistence in phage-bacteria community dynamics

Raunak Dey, Ashley R. Coenen, Natalie Solonenko, Marie Burris, Anna I. Mackey, Julia Galasso, Christine L Sun, David Demory, Daniel Muratore, Stephen J. Beckett, Matthew B. Sullivan, Joshua S. Weitz

This study shows that higher-order interactions and density-dependent feedback stabilize phage-bacteria communities, challenging pairwise model predictions of population collapse.

The ISME Journal · Jan 1, 2026Peer-reviewedEcology

Synthetic community Hi-C benchmarking provides a baseline for virus-host inferences

Rokaiya Nurani Shatadru, Natalie Solonenko, Christine L Sun, Matthew B. Sullivan

The paper benchmarks Hi-C for virus-host linkage detection using synthetic communities and applies optimized protocols to soil samples, revealing new interactions and establishing performance metrics.

bioRxiv · Feb 12, 2025 · PreprintMicrobiology

Four additional natural 7-deazaguanine derivatives in phages and how to make them

Cui Liang, Seetharamsing Balamkundu, Chuan‐Fa Liu, Hong Ye, Jacob Hourihan, Astrid Rausch, Christopher Hauß, Emelie Nilsson, Matthias Hoetzinger, Karin Holmfeldt, Weijia Zhang, Laura Martínez-Álvarez, Xu Peng, Denise M. Tremblay, Sylvain Moineau, , Geoffrey Hutinet

The paper identifies four new 7-deazaguanine derivatives in phages and characterizes enzymes involved in their biosynthesis and insertion into DNA.

Nucleic Acids Research · Aug 7, 2023Peer-reviewedGenomics

Long-read viral metagenomics enables capture of abundant and microdiverse viral populations and their niche-defining genomic islands

Joanna Warwick-Dugdale, Natalie Solonenko, Karen Moore, Lauren Chittick, Ann Gregory, Michael J. Allen, Matthew B. Sullivan, Ben Temperton

The paper introduces VirION, a long-read sequencing method for viral metagenomics that improves genome assembly and captures microdiverse viral populations and genomic islands.

PeerJ · Apr 25, 2019Peer-reviewedGenomics

Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses

Simon Roux, Jennifer R Brum, Bas E. Dutilh, Shinichi Sunagawa, Melissa B Duhaime, Alexander Loy, Bonnie T Poulos, Natalie Solonenko, Elena Lara, Julie Poulain, Stephane PESANT, Stefanie Kandels-Lewis, Céline Dimier, Marc Picheral, Sarah Searson, , Matthew B Sullivan

The paper analyzes global ocean viruses to uncover their genomic diversity and ecological roles in biogeochemical cycles.

Nature · Sep 21, 2016Peer-reviewedEcology