Author

Nicodemo Mazzaferro

New York University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:mechanistic / dynamical model· 1 Research Focus:protein folding & dynamics· 1 Assay:protein structure· 1 Approach:statistical model· 1

Frequent Co-Authors

Anna M. Muller· 1 shared Daisy A. Alvarado· 1 shared Frank X. VázqueziD· 1 shared Glen M. HockyiD· 1 shared Noriyo Onishi· 1 shared Pilar CossioiD· 1 shared Pratyush TiwaryiD· 1 shared Špela KunsteljiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 16 mutual co-author links

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1 shared paperBiophysics

Anna M. Muller

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2 papers

Recent·Most cited

Molecular Dynamics Study of α-Synuclein Domain Deletion Mutant Monomers

Noriyo Onishi, Nicodemo Mazzaferro, Špela Kunstelj, Daisy A. Alvarado, Anna M. Muller, Frank X. Vázquez

This study uses molecular dynamics simulations to analyze how domain deletions in α-synuclein affect protein structure and interactions with lipid membranes.

Biomolecules · Nov 10, 2025Peer-reviewedBiophysics

Using Time Dependent Rate Analysis to Evaluate the Quality of Machine Learned Reaction Coordinates for Biasing and Computing Kinetics

Nicodemo Mazzaferro, Suemin Lee, Pilar Cossio, Pratyush Tiwary, Glen M. Hocky

This study evaluates the quality of machine learned reaction coordinates using the gamma metric and shows an inverse correlation with accelerated times.

The Journal of Physical Chemistry B · Oct 8, 2025Peer-reviewedBiophysics