Author

Omkar Shinde

Children's Hospital of Philadelphia

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:drug response / drug discovery· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Assay:proteomics· 1 Approach:statistical model· 1 Assay:structural biology· 1

Frequent Co-Authors

Nikolaos G. SgourakisiD· 2 shared Photis RotsidesiD· 2 shared Carl H. JuneiD· 1 shared Chloe S. WangiD· 1 shared Daniel HwangiD· 1 shared Ean L. Small· 1 shared Eli Laskawy· 1 shared Haotian Du· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersSynthetic Biology

Nikolaos G. SgourakisORCID

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2 papers

Recent·Most cited

A generalizable system for antigenic peptide targeting across HLA-I allotypes

Wyatt Blackson, Ean L. Small, Shirley M. Sun, Omkar Shinde, Ram Pantula, Sean J. Wang, Photis Rotsides, Haotian Du, Yi Sun, Daniel Hwang, Chloe S. Wang, Tianyu Lu, Eli Laskawy, Richa Kapoor, Muzamil Yaqub Want, , Nikolaos G. Sgourakis

The paper develops a system to create binders compatible across HLA allotypes, validated against clinically relevant antigens and demonstrated in CAR T cells.

bioRxiv · May 22, 2026 · PreprintSynthetic Biology

A miniaturized MR1 metabolite display system with native-like protein features

Photis Rotsides, Omkar Shinde, Julia N. Danon, Nikolaos G. Sgourakis

This paper develops a stabilized MR1 variant, SMART-MR1, that preserves native-like ligand presentation and TCR recognition while enabling biochemical and structural studies.

bioRxiv · Apr 15, 2026 · PreprintBiochemistry