Monitoring the microbiome for food safety and quality using deep shotgun sequencing
K. L. Beck, N. Haiminen, D. Chambliss, S. B. Edlund, M. Kunitomi, B. C. Huang, N. Kong, B. Ganesan, R. Baker, P. Markwell, B. Kawas, M. Davis, R. J. Prill, H. Krishnareddy, E. Seabolt, , Consortium for Sequencing the Food Supply Chain
The paper uses deep shotgun sequencing to analyze food microbiomes, identifying microbial genera and observing shifts related to ingredient composition, but finds limited correlation between RNA sequencing and Salmonella growth.
bioRxiv · May 18, 2020Microbiology