Author

Roman Mikhaylenko

University of Cambridge

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Microbiology· 1

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Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Organism:E. coli· 1 Assay:long-read sequencing· 1 Assay:metagenomics· 1

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Aaron WeimanniD· 1 shared Adam M. DinaniD· 1 shared David C. Abelson· 1 shared Divya Arora· 1 shared John A. LeesiD· 1 shared Maciej Wiatrak· 1 shared Maria BrbićiD· 1 shared Maria Ntemourtsidou· 1 shared

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1 paper

Recent·Most cited

MicrobiologybioRxivPreprintJul 20, 2025

✦ In-depth digest

A contextualised protein language model reveals the functional syntax of bacterial evolution

Maciej Wiatrak, David C. Abelson, Roman Mikhaylenko…·R. Andres Floto

Trained on over 1.3 million bacterial genomes represented as ordered protein sequences, the transformer foundation model Bacformer predicts protein interactions, operons, essentiality, and phenotypes while generating trait-conditioned synthetic proteomes.

15 citations

E. colibacteria (other)