Author

S. Mathioni

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 6

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 5 Organism:plant (other)· 5 Research Focus:cell type annotation· 4 Approach:statistical model· 4 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Approach:experimental assay· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

B. C. Meyers· 5 shared A. Chalfun-Junior· 2 shared A. Kakrana· 2 shared P. Baldrich· 2 shared R. R. de Oliveira· 2 shared S. Tamim· 2 shared B. Santos Ciscon· 1 shared C. N. Fernandes- Brum· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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5 shared papersPlant Biology

B. C. Meyers

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6 papers

Recent·Most cited

The floral development of the allotetraploid Coffea arabica L. correlates with a small RNA dynamic reprogramming.

T. H. C. Ribeiro, P. Baldrich, R. R. de Oliveira, C. N. Fernandes-Brum, S. Mathioni, T. C. d. S. Cardoso, M. S. Gomes, L. R. Amaral, K. K. P. de Oliveira, G. L. dos Reis, B. C. Meyers, A. Chalfun-Junior

The paper analyzes small RNA dynamics during floral development in Coffea arabica to identify stage-specific regulatory mechanisms affecting flower development and ripening.

bioRxiv · Aug 23, 2023 · PreprintPlant Biology

Coffee microsporogenesis and related small interfering RNAs biosynthesis have a unique pattern among eudicots suggesting a sensitivity to climate changes.

K. de Oliveira, R. R. de Oliveira, G. d. C. Rume, T. C. Rume, C. N. Fernandes- Brum, A. Kakrana, S. Mathioni, B. C. Meyers, M. d. S. Gomes, A. Chalfun-Junior

The paper studies microsporogenesis and phasiRNA biosynthesis in Coffea arabica, revealing unique patterns and temperature sensitivity in eudicots.

bioRxiv · Jul 6, 2023 · PreprintPlant Biology

LysM receptors in Coffea arabica: identification, characterization, and gene expression in response to Hemileia vastatrix

M. Santos, M. L. Resende, B. Santos Ciscon, N. Freitas, M. Pereira, T. Reichel, S. Mathioni

This study identifies and characterizes LysM receptor-like sequences in Coffea arabica and shows their expression is induced by Hemileia vastatrix inoculation.

bioRxiv · Oct 7, 2021 · PreprintPlant Biology

Ligation bias is a major contributor to nonstoichiometric abundances of secondary siRNAs and impacts analyses of microRNAs

P. Baldrich, S. Tamim, S. Mathioni, B. C. Meyers

The paper evaluates small RNA library construction methods in plants, showing that ligation bias affects secondary siRNA abundances and microRNA analysis.

bioRxiv · Sep 14, 2020 · PreprintPlant Biology

Cis-directed cleavage and nonstoichiometric abundances of 21-nt reproductive phasiRNAs in grasses

S. Tamim, Z. Cai, S. Mathioni, J. Zhai, C. Teng, Q. Zhang, B. C. Meyers

The paper characterizes 21-nt reproductive phasiRNAs in grasses, showing cis-directed cleavage and nonstoichiometric abundance patterns in rice and maize.

bioRxiv · Mar 17, 2018Plant Biology

Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs

P. Patel, S. Mathioni, A. Kakrana, H. Shatkay, B. C. Meyers

The paper uses machine learning to identify reproductive phasiRNAs in rice and maize, finding they have distinct sequence features and strand specificity compared to other small RNAs.

bioRxiv · Mar 17, 2018Plant Biology