Author

Sarah Pedersen

Iowa State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:genome assembly· 2 Approach:statistical model· 2 Organism:zebrafish· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Matthew B. HuffordiD· 3 shared Amanda M. Gilbert· 2 shared Arun Somwarpet SeetharamiD· 2 shared Candice N. HirschiD· 2 shared David E. HufnageliD· 2 shared Doreen WareiD· 2 shared Jeffrey Ross‐IbarraiD· 2 shared Jianing LiuiD· 2 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Matthew B. HuffordORCID

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3 papers

Recent·Most cited

De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

Matthew B. Hufford, Arun Somwarpet Seetharam, Margaret Roth Woodhouse, Kapeel M. Chougule, Shujun Ou, Jianing Liu, William A. Ricci, Tingting Guo, Andrew J. Olson, Yinjie Qiu, Rafael Della Coletta, Silas B. Tittes, Asher I. Hudson, Alexandre P. Marand, Sharon Wei, , R. Kelly Dawe

A multi-genome analysis of maize reveals previously unknown variation in gene content, genome structure, and methylation.

Science · Aug 5, 2021Peer-reviewedGenomics

Effect of Sequence Depth and Length in Long-read Assembly of the Maize Inbred NC358

Shujun Ou, Jianing Liu, Kapeel M. Chougule, Arkarachai Fungtammasan, Arun Somwarpet Seetharam, Joshua C. Stein, Víctor Llaca, Nancy Manchanda, Amanda M. Gilbert, Sharon Wei, Chen-Shan Chin, David E. Hufnagel, Sarah Pedersen, Samantha J. Snodgrass, Kevin A. Fengler, , Doreen Ware

This study evaluates the impact of sequence depth and read length on long-read assembly quality for the maize genome, finding that lower depths and shorter reads result in fragmented assemblies.

Nature Communications · May 8, 2020Peer-reviewedGenomics

The Potential Role of Genetic Assimilation during Maize Domestication

Anne Lorant, Sarah Pedersen, Irene Holst, Matthew B. Hufford, Klaus Winter, Dolores R. Piperno, Jeffrey Ross‐Ibarra

The paper examines gene expression changes in maize and teosinte under past and present environmental conditions to explore the role of genetic assimilation in maize domestication.

PLoS ONE · Sep 8, 2017Peer-reviewedGenomics