Author

Siqi Chen

Shandong University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:human· 1

Frequent Co-Authors

Baoyue Zhang· 1 shared Chengzhi Jiao· 1 shared Curtis J. Pozniak· 1 shared Daowen WangiD· 1 shared Ding Wang· 1 shared Frederic Choulet· 1 shared Georg HabereriD· 1 shared Guangwei LiiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Baoyue Zhang

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

WheatPanRef: a unified linear pan-reference genome for wheat genomics

Jianxia Niu, Peng Zhao, Wenjie Du, Xiaoyu Zhang, Hang He, Rudi Appels, Jiwen Zhao, Shengwei Ma, Tiantian Chen, Georg Haberer, Manuel Spannagl, Zhanhao Cao, Yuqi Zhang, Lingfeng Miao, Siqi Chen, , Qixin Sun

WheatPanRef provides a unified linear pan-reference genome for wheat, improving read alignment and enabling integration of genomic resources across diverse accessions.

bioRxiv · Nov 5, 2026 · PreprintGenomics

Melody: Decoding the Sequence Determinants of Locus Specific DNA Methylation Across Human Tissues

Junru Jin, Ding Wang, Jianbo Qiao, Wenjia Gao, Yuhang Liu, Siqi Chen, Quan Zou, Shu Wu, Ran Su, Leyi Wei

Melody predicts DNA methylation from genomic sequences across human tissues and outperforms existing methods, also generalizing to methylation quantitative trait locus effect prediction.

Nature Communications · Aug 17, 2026Peer-reviewedBioinformatics