Author

Siyu Pan

University of Pennsylvania

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Genetics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:experimental assay· 1 Organism:fungi (other)· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Bernhard DumouliniD· 1 shared Chenyu LiiD· 1 shared Elias Mark Ziyadeh· 1 shared Eunji HaiD· 1 shared Huan Ma· 1 shared Jie Yan· 1 shared Jinhu Guo· 1 shared Jonathan L. LevinsohniD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenetics

Bernhard DumoulinORCID

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2 papers

Recent·Most cited

Nephrobase Cell+: Multimodal Single-Cell Foundation Model for Decoding Kidney Biology

Chenyu Li, Elias Mark Ziyadeh, Yash Sharma, Bernhard Dumoulin, Jonathan L. Levinsohn, Eunji Ha, Siyu Pan, Vishwanatha Rao, Madhav Subramaniyam, Márió Szegedy, Nancy Ruonan Zhang, Katalin Suszták

Nephrobase Cell+ is a kidney-specific foundation model that outperforms existing models in single-cell analysis, cross-species transfer, and batch effect correction.

bioRxiv · Sep 30, 2025 · PreprintGenetics

The synchronization and adaptation of Neurospora crassa circadian and conidiation rhythms to short light-dark cycles

Huan Ma, Luyao Li, Jie Yan, Yin Zhang, Weirui Shi, Yunzhen Li, Menghan Gao, Siyu Pan, Ling Yang, Jinhu Guo

This study investigates how Neurospora crassa adapts its circadian and conidiation rhythms to short light-dark cycles, showing that core clock protein FREQUENCY entrains to cycles longer than 3:3 but free runs otherwise.

bioRxiv · Jun 20, 2018 · PreprintMicrobiology