Author

T. D. Lieberman

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Evolutionary Biology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Assay:whole-genome sequencing· 4 Research Focus:cell type annotation· 3 Research Focus:chromatin & epigenetic regulation· 3 Organism:human· 3 Research Focus:clustering· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2

Frequent Co-Authors

E. J. Alm· 2 shared V. D. Khadka· 2 shared A. C. Kuan· 1 shared A. Conwill· 1 shared A. D. Tripp· 1 shared A. J. Poret· 1 shared C. Romo-Gonzalez· 1 shared F. M. Key· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersMicrobiology

E. J. Alm

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Commensal skin bacteria exacerbate inflammation and delay skin healing

V. D. Khadka, L. Markey, M. Boucher, T. D. Lieberman

This study shows that high-dose application of commensal skin bacteria delays wound healing and increases inflammation in mice.

bioRxiv · Dec 4, 2023 · PreprintMicrobiology

Reversions mask the contribution of adaptive evolution in microbiomes

P. A. Torrillo, T. D. Lieberman

The paper shows that adaptive reversion explains dN/dS decay in microbiomes, challenging the classical interpretation of purifying selection.

bioRxiv · Sep 14, 2023Evolutionary Biology

Anatomy promotes neutral coexistence of strains in the human skin microbiome

A. Conwill, A. C. Kuan, R. Damerla, A. J. Poret, J. S. Baker, A. D. Tripp, E. J. Alm, T. D. Lieberman

The paper investigates how host anatomy influences strain coexistence in the human skin microbiome, finding that pores limit competition by maintaining single-strain dominance.

bioRxiv · May 12, 2021Microbiology

On-person adaptive evolution of Staphylococcus aureus during treatment for atopic dermatitis

F. M. Key, V. D. Khadka, C. Romo-Gonzalez, K. J. Blake, L. Deng, T. C. Lynn, J. C. M. Lee, I. Chiu, M. T. Garcia, T. D. Lieberman

This study tracks S. aureus adaptation during AD treatment, finding de novo mutations and capD gene selection linked to disease severity.

bioRxiv · Mar 24, 2021Microbiology

Adaptive evolution within the gut microbiome of individual people

S. Zhao, T. D. Lieberman, M. Poyet, M. Groussin, S. M. Gibbons, R. J. Xavier, E. J. Alm

This study tracks genetic adaptation of B. fragilis in individual human gut microbiomes over time, revealing persistent evolutionary dynamics and niche differentiation within a single host.

bioRxiv · Mar 9, 2018Evolutionary Biology