Author

Thomas Rife

Loyola Marymount University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Mandy KorpusikiD· 1 shared Ngoc Kim Ngan Tran· 1 shared Zara Alavi· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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3 top collaborators · 3 mutual co-author links

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1 shared paperBiophysics

Mandy KorpusikORCID

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1 paper

Recent·Most cited

Who contributes to whom: following the evidence behind protein language-model predictions of backbone variability

Ngoc Kim Ngan Tran, Thomas Rife, Mandy Korpusik, Zara Alavi

ESMfluc predicts local backbone variability in proteins using attention-based evidence decomposition, showing how sequence positions contribute to predictions of single or multi-PB states.

bioRxiv · Oct 28, 2026 · PreprintBiophysics