Author

Thomas Wolf

Hugging Face

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Anton Lozhkov· 2 shared Diego di BernardoiD· 2 shared Georgia ChanningiD· 2 shared Kashif Rasul· 2 shared Leandro von Werra· 2 shared Qiuyi LiiD· 2 shared Bastian SeelbinderiD· 1 shared Carlos Patiño· 1 shared

Activity by Year

2019-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersGenomics

Anton Lozhkov

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Author profile →

3 papers

Recent·Most cited

Carbon-A: Unified Genome Annotation across Eukaryotic Diversity

Georgia Channing, Zhenghang Shi, Xiaoxing Zhang, Mathieu Morlon, Kashif Rasul, Anton Lozhkov, Shikun Feng, J Li, Haiguang Liu, Diego di Bernardo, Nieng Yan, Tao Qin, Thomas Wolf, Leandro von Werra, Qiuyi Li

Carbon-A annotates protein-coding genes across eukaryotic genomes using a large encoder model, achieving high accuracy and enabling the creation of a comprehensive annotation database.

bioRxiv · Oct 21, 2026 · PreprintGenomics

Carbon: Decoding the Language of Life

Loubna Ben Allal, Qiuyi Li, Maurizio Fiusco, Lewis Tunstall, Kashif Rasul, Edward Beeching, Dana Aubakirova, Carlos Patiño, Thibaud Frere, Anton Lozhkov, Georgia Channing, Thomas Wolf, Diego di Bernardo, Leandro von Werra

The paper introduces CO_SCPLOWARBONC_SCPLOW, a family of efficient DNA language models that address challenges in genomic sequence modeling by adapting LLM techniques to DNA's unique properties.

bioRxiv · May 25, 2026 · PreprintGenomics

GEO2RNAseq: An easy-to-use R pipeline for complete pre-processing of RNA-seq data

Bastian Seelbinder, Thomas Wolf, Steffen Priebe, Sylvie McNamara, Silvia Gerber, Reinhard Guthke, Jörg Linde

GEO2RNAseq is an R pipeline that automates RNA-seq pre-processing and analysis, supporting single, dual, and triple RNA-seq data.

bioRxiv · Sep 16, 2019 · PreprintBioinformatics