Author

V. Rizzi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:protein folding & dynamics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:drug response / drug discovery· 1 Approach:mechanistic / dynamical model· 1 Assay:multiome· 1 Assay:protein structure· 1

Frequent Co-Authors

F. L. Gervasio· 2 shared N. Ansari· 2 shared A. Borsatto· 1 shared E. Gianquinto· 1 shared M. Parrinello· 1 shared P. Carloni· 1 shared S. Aureli· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 9 mutual co-author links

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2 shared papersBiophysics

F. L. Gervasio

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3 papers

Recent·Most cited

SWISH-X, an expanded approach to detect cryptic pockets inproteins and at protein-protein interfaces

A. Borsatto, E. Gianquinto, V. Rizzi, F. L. Gervasio

SWISH-X identifies cryptic pockets in proteins and protein-protein interfaces by combining SWISH with OPES MultiThermal for improved prediction.

bioRxiv · Nov 3, 2023Biophysics

OneOPES, a combined enhanced sampling method to rule them all

V. Rizzi, S. Aureli, N. Ansari, F. L. Gervasio

The paper introduces OneOPES, a replica exchange method combining multi-replica simulations and CV-based enhanced sampling to improve phase space sampling in molecular dynamics.

bioRxiv · Mar 6, 2023Biophysics

Water-triggered, irreversible conformational change of SARS-CoV-2 main protease on passing from the solid state to aqueous solution

N. Ansari, V. Rizzi, P. Carloni, M. Parrinello

The paper shows that water molecules trigger an irreversible conformational change in SARS-CoV-2 main protease when transitioning from solid to aqueous state, leading to asymmetric subunit conformations.

bioRxiv · May 21, 2021Biophysics