Author

W. Nicholas Haining

Primary ORCID profile (0000-0001-7871-3762 · 2 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

W. Nicholas HainingiD2 papers · Arsenal Biosciences (United States)

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Jernej Godec· 2 shared Arlene H Sharpe· 1 shared Daniel C Douek· 1 shared Eleanor J Barnes· 1 shared Felix Wu· 1 shared Jill P. Mesirov· 1 shared Kathleen B Yates· 1 shared Kevin Bi· 1 shared

Activity by Year

2016-2017 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Jernej Godec

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2 papers

Recent·Most cited

BioinformaticsNucleic Acids ResearchPeer-reviewedJul 17, 2017

Targeted reconstruction of T cell receptor sequence from single cell RNA-sequencing links CDR3 length to T cell differentiation state

Shaked Afik, Kathleen B Yates, Kevin Bi…·Nir Yosef

This study develops TRAPeS, a tool to reconstruct TCR sequences from scRNA-seq data, and shows that CDR3 length correlates with T cell differentiation state in YFV-specific CD8+ T cells.

DOI 10.1093/nar/gkx615

BioinformaticsbioRxivPreprintApr 11, 2016

A method for downstream analysis of gene set enrichment results facilitates the biological interpretation of vaccine efficacy studies

Yan Tan, Jernej Godec, Felix Wu…·W. Nicholas Haining

This paper introduces a method to refine gene set enrichment analysis results by identifying key gene groups, improving biological interpretation of vaccine efficacy studies.

DOI 10.1101/043158

humanbulk RNA-seq