Author

Xiaofei Yang

Xi'an Jiaotong University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Genomics· 3 Bioinformatics· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Organism:human· 5 Approach:experimental assay· 4 Research Focus:database / resource· 3 Assay:long-read sequencing· 3 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Kai YeiD· 4 shared Shijie WaniD· 3 shared Zexin ZhangiD· 3 shared Bing SuiD· 2 shared Dan YuiD· 2 shared Feifei Zhou· 2 shared Guojie ZhangiD· 2 shared Kezhi Fu· 2 shared

Activity by Year

2026-2026 · peak 5/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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4 shared papersGenomics

Kai YeORCID

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Author profile →

5 papers

Recent·Most cited

Cellular context shapes the transcriptomic impact of somatic variants

Peisen Sun, Peng Jia, Chuyuan Lou, Xiaona Li, Miaojing Li, Ruifen Zhang, Hui Lin, Xiujuan Li, Yunsong Zhou, Shuzheng Cai, Zexin Zhang, Pengyu Zhang, Tun Xu, Songbo Wang, Yudong Wang, , Kai Ye

The paper shows that somatic variants' transcriptomic impact depends on cellular context, not just sequence, using single-cell transcriptomics and new tools.

bioRxiv · Nov 2, 2026 · PreprintGenetics

Complete Telomere-to-Telomere Assembly of the Y Chromosome in the Chinese Quartet

Bo Wang, Zexin Zhang, Shijie Wan, Yu Zhang, Xia Wang, Lianhua Dong, Kai Ye, Xiaofei Yang

The paper presents a complete, gapless telomere-to-telomere Y chromosome assembly from the Chinese Quartet, improving genomic reference quality for East Asian populations.

bioRxiv · Sep 14, 2026 · PreprintGenomics

Hidden genetic diversity in 320 nearly-complete East Asian genome assemblies

Dongya Wu, Chentao Yang, Quanyu Chen, Mingyu Suo, Feifei Zhou, Anguo Liu, Dan Yu, Lei Nie, Ting Yang, Yanqing Sun, Junmin Han, Lili Yang, Qingyang Ni, Di Sun, Yanlin Lu, , Guojie Zhang

The paper presents 320 nearly-complete East Asian genome assemblies, revealing new genetic diversity and structural variations not present in existing global pangenomes.

bioRxiv · Jul 28, 2026 · PreprintGenomics

Multidimensional variation and population stratification across 8000 complete human centromeres

Yanqing Sun, Shijie Wan, Lei Nie, Dan Yu, Feifei Zhou, Yi Yang, Xiangyu Yang, An Liu, Quanyu Chen, Kezhi Fu, Qingyang Ni, Yaoxi He, Bing Su, Yafei Mao, Kai Ye, , Wu Dongya

Over 8,000 gapless human centromeres reveal population-stratified satellite-array, inversion and haplotype variation, multiple candidate kinetochore sites in 16.8% of centromeres, and single-base substitution rates comparable to flanking pericentromeres.

bioRxiv · Jul 24, 2026 · PreprintGenomics✦ In-depth digest

MEIsensor: a deep-learning method for mobile element insertion discovery

Yudong Wang, Pengyu Zhang, Shijie Wan, Zexin Zhang, Peisen Sun, Tun Xu, Peng Jia, Kai Ye, Xiaofei Yang

MEIsensor detects and classifies mobile element insertions from long-read sequencing data, outperforming existing tools in accuracy and efficiency, especially for complex insertions.

bioRxiv · Mar 27, 2026 · PreprintBioinformatics