Author

Yan Sun

South Central Minzu University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Aki SinkkoneniD· 1 shared Anirudra ParajuliiD· 1 shared Chong Ding· 1 shared Dong LuiD· 1 shared Emma E. RingqvistiD· 1 shared Guofeng MengiD· 1 shared Heikki HyötyiD· 1 shared Huanming Yang· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperMicrobiology

Aki SinkkonenORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

LucaCell: a sequence-centric foundation model for cross-species single-cell analysis

Yan Sun, Yong He, Minsi Ren, Yanhui Wang, Penghao Xu, Yong Hou, Yu Kang, Tingjun Hou, Jieping Ye, Huanming Yang, Zheng Wang

LucaCell is a sequence-centric foundation model that improves cross-species single-cell analysis by using mRNA sequence embeddings instead of fixed gene identifiers.

bioRxiv · Sep 14, 2026 · PreprintBioinformatics

Production, analysis, and safety assessment of a soil and plant-based natural material with microbiome- and immune-modulatory effects

Anirudra Parajuli, Iida Mäkelä, Marja I. Roslund, Emma E. Ringqvist, Juulia Manninen, Yan Sun, Noora Nurminen, Sami Oikarinen, Olli H. Laitinen, Heikki Hyöty, Malin Flodström‐Tullberg, Aki Sinkkonen

This study standardizes the production of a soil and plant-based material, assesses its microbial content and safety, and demonstrates its potential to modulate the microbiome and immune system without adverse effects.

Methods · Sep 19, 2024Peer-reviewedMicrobiology

Accumulated degeneration of transcriptional regulation contributes to disease development and detrimental clinical outcomes of Alzheimer’s disease

Guofeng Meng, Dong Lu, Yu Feng, Jijia Sun, Chong Ding, Yan Sun, Xuan Liu, Jiapei Dai, Wenfei Jin, Weidong Zhang

This study identifies accumulated transcriptional regulation degeneration as a key contributor to Alzheimer's disease progression and clinical outcomes.

bioRxiv · Sep 28, 2019 · PreprintSystems Biology