Author

Yufei Cai

University of Notre Dame

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 1 Assay:electrophysiology· 1 Approach:statistical model· 1

Frequent Co-Authors

Dailin GaniD· 1 shared Hayden J. Ousley· 1 shared Hui Zhang· 1 shared Hyongsok Tom SohiD· 1 shared Jun LiiD· 1 shared Jun LiiD· 1 shared Kaiyu X. FuiD· 1 shared Keyang Zhou· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Dailin GanORCID

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2 papers

Recent·Most cited

Understanding the LLM-based gene embeddings

Yufei Cai, Dailin Gan, Hui Zhang, Jun Li

This study evaluates LLM-derived gene embeddings for pathway information recovery using GSEA, showing they encode substantial biological knowledge.

bioRxiv · Dec 22, 2025 · PreprintBioinformatics

Algorithm-Powered Analyzer for Continuous Electrochemistry: A Toolkit for Real-Time Electrochemical Data Analysis

Yan Song Jiang, Yihang Chen, Yufei Cai, Keyang Zhou, Hayden J. Ousley, Jun Li, Hyongsok Tom Soh, Kaiyu X. Fu

The paper introduces A-PACE, an open-source toolkit for real-time electrochemical data analysis, improving peak detection, baseline fitting, and data processing efficiency.

bioRxiv · Sep 28, 2025 · PreprintBioengineering