bioRxivBioengineering
S-MiRAGE: A quantitative, secreted RNA-based reporter of gene expression and cell persistence
K. Mitra, W. N. Feist, S. Alfossi, E. Fuentes-Mattei, M. I. Almeida, J. J. Kim, G. A. Calin, A. Warmflash
Abstract
Non-destructive measurements of cell persistence and gene expression are crucial for longitudinal research studies and for prognostic assessment of cell therapies. Here we describe S-MiRAGE, a platform that utilizes small secreted RNA molecules as sensitive and quantitatively accurate reporters of cellular processes. We demonstrate the utility of S-MiRAGE by monitoring the differentiation status of human embryonic stem cells in vitro, and tumor growth in a mouse model in vivo.
- organism: human
- organism: mouse
- assay: scRNA-seq
- assay: spatial transcriptomics
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- MicroRNA-directed control of complex mRNA stability patterns across cell types
Lukas Oesinghaus, Sebastian M. Castillo-Hair, … Georg Seelig·bioRxiv·Oct 28, 2024
- Monitoring Gene Expression in Retina with Synthetic Serum Markers
Jiaxiong Lu, Sangsin Lee, … Rui Chen·bioRxiv·Jan 16, 2026
- Self-amplifying RNA enables rapid, durable, integration-free programming of hiPSCs
Catherine Marin Della Santina, Deon S. Ploessl, … Laurie A. Boyer·Cell Reports MethodsPeer-reviewed·Sep 1, 2026
- Profiling microRNA expression during senescence and aging: mining for a diagnostic tool of senescent-cell burden
Moritz Weigl, Teresa L. Krammer, … Johannes Grillari·bioRxiv·Apr 10, 2024
- Sensitivity of Gene Sets to miRNA Regulation: A Cell-Based Probabilistic Approach
Shelly Mahlab-Aviv, Nathan Linial, Michal Linial B·bioRxiv·May 9, 2020
- Multifunctional semiconducting polymer dots as a miRNA delivery system for osteogenic differentiation and stem cell tracking
Ping Song, Jørgen Kjems·bioRxiv·Aug 6, 2025