mock-fastq-generator: A synthetic FASTQ generator
Alberto Florez Prada, Darren J. Hart
mock-fastq-generator creates synthetic FASTQ files for testing bioinformatics pipelines without using biological data.
363,000+ bioRxiv and medRxiv preprints, including those later published in peer-reviewed journals, across 26 biological disciplines.
Alberto Florez Prada, Darren J. Hart
mock-fastq-generator creates synthetic FASTQ files for testing bioinformatics pipelines without using biological data.
Clàudia Morros-Bernaus, Nia Feakes, Urszula Oko…·David Sünderhauf
This study demonstrates that mobile CRISPR-Cas9 tools can effectively prevent the dissemination of an AMR plasmid from K. pneumoniae to E. coli under various experimental conditions.
Jacob L. Berrigan, Stephanie R. Monticelli, Matt Daileg Ramirez…·Ezgi Kaşıkcı
This study identifies phosphatidylserine receptors as critical for CCHFV infection and shows that targeting these receptors can protect against viral disease.
Justin Abi Assaf, Gwénaëlle Le Gall, Ruth Sullivan…·Simone Immler
This study examines how different dietary fibre regimes affect the gut microbiome, SCFA profiles, and immune responses in zebrafish, showing context-specific effects influenced by sex and dietary context.
Taylor J Tvrdy, Aditi Bhattacharya, Rahul Radhakrishna…·Amol P. Yadav
This study links spinal cord stimulation periodicity to artificial sensory perception by identifying spike-count regimes that shape detection and discrimination behavior in rodents.
Carlisle R. DeJulius, Sarah A. Naguib, Patricia L. Poley…·Tonia S. Rex
This paper develops ROS-scavenging microparticles for sustained EPO release to treat glaucoma neurodegeneration, showing neuron preservation in animal models.
Tamaki Kurosawa, Cédrine Blavet, Marie-Ange Bonnin…·Delphine Duprez
The paper identifies transcriptionally distinct muscle nuclei in fetal chicken limb muscles, showing tip and central domain identities and signaling roles in muscle development.
Aywin Wu, Jen-Chien Lai, Mo Kwan Ho…·Russell W. Chan
This paper evaluates a single-plane electrical impedance tomography framework for assessing liver and kidney health, finding it feasible and effective for multi-organ evaluation.
Laura Almada, Yamila Gazzoni, Juan N. Quiroz…·Adriana Gruppi
The paper compares splenic and lymph node antibody-secreting cells in Trypanosoma cruzi infection, finding distinct transcriptional, phenotypic, and functional profiles.
Guanhui Wu, Mingfeng Liu, Arthur J. Zaug…·Thomas R. Cech
This study shows RTEL1 ATPase activity is essential for both telomere strand synthesis and TERT regulation, with reduced TERT providing an adaptive survival mechanism in RTEL1-defective cells.
Qian Feng, Pierce Rafter, Iain Wilson…·Warren C. Conaty
The paper identifies environmental factors and growth stages affecting fibre yield and quality in rain-grown cotton using statistical models and field data.
Louis Valay, Amal Kasri, Vincent Fontaine…·Marie‐Claude Potier
Alan de Brito Carneiro, Robert W. Wysocki, Xu Zhang…·Roberto F. Machado
This study shows that lipid droplet formation in pulmonary microvascular endothelial cells protects against hemin-induced inflammation and cell death.
Bastian Ferdinand Bundschuh, Jennifer Loschwitz, Birgit Strodel
This study uses molecular dynamics simulations to show that open-state GBP1 and GBP2 require specific membrane environments to remain stable on bacterial membranes.
Victor Loegler, Anne Friedrich, Joseph Schacherer
The paper analyzes allopolyploidization events in Brettanomyces bruxellensis using graph pangenomes to identify structural variants and their functional impacts.
Bence Olasz, M. Wisniewska, Anna Koczurowska…·Przemysław Nogły
This paper establishes a robust workflow for injector-based pump-probe TR-SSX at the MicroMAX beamline to study CrPhotLOV1 structural dynamics.
Dmytro V. Vasylyev, Sidharth Tyagi, Mohammad‐Reza Ghovanloo…·Stephen G. Waxman
The paper investigates how combinations of Nav1.7 and Nav1.8 channels affect nociceptor excitability, showing that their synergistic effects vary across neuronal subtypes.
Yuanyuan Duan, Alexandra Valeanu, Rob P.W. Rouhl…·Friederike Ehrhart
The paper identifies converging molecular pathways in genetic epilepsies through network analysis of epilepsy-associated genes and highlights potential therapeutic targets.
Alvaro Murillo, Alys N Aston, Mariah J. Lelos, Vincent Dion
This study demonstrates that a single-AAV vector delivering the SpCas9 nickase and sgRNA achieves greater CAG/CTG repeat contraction in a Huntington's disease mouse model compared to a dual-vector system.