Cell-in-drop genotyping detects megabase-scale loss of heterozygosity as a quantitative marker for CRISPR-Cas9 on-target toxicity
Darpan Medhi, Linas Mazutis, Maria Jasin
bioRxiv · Nov 2, 2026 · PreprintBioengineering
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Darpan Medhi, Linas Mazutis, Maria Jasin
bioRxiv · Nov 2, 2026 · PreprintBioengineering
Benjamin C Klementz, Max Hämmerle, Ethan M Laumer, Sophie M Neu, Madeline M Koebrick, Nithya Atla, Pranil Panda, Neeharika Verma, Georg Brenneis, Prashant P Sharma
The paper examines proximal podomere patterning in sea spiders and arachnids, finding homoplastic evolution of gene expression patterns that challenges assumptions about leg segment homology.
bioRxiv · Nov 2, 2026 · PreprintDevelopmental Biology
Eva M. Lopez-Fernandez, MA Zwieniecki, A. Tixier, Juan A. Botia, Pedro Jose Martinez-Garcia
The paper presents the Almond Expression Atlas, a comprehensive transcriptomic resource integrating RNA-seq data to identify tissue-specific genes and improve gene expression analysis in almond.
bioRxiv · Nov 2, 2026 · PreprintBioinformatics
Daniel Dylewsky, Matthew E. Dyson, Jame E. Paterson, Richard Schuster, Joseph R. Bennett
The paper presents an optimized geospatial prioritization scheme for bird conservation in Eastern Canada using linear programming to maximize population coverage.
bioRxiv · Nov 2, 2026 · PreprintEcology
Maria Agullo-Samper, Cristina Ferrer-Blanco, Carlos E Gonzalez, Sabrina Gennis, Kaare H Jensen, Juan M Losada
The paper quantifies phloem conduit geometry and carbohydrate concentrations in avocado plants during development, showing changes in phloem structure and transport efficiency.
bioRxiv · Nov 2, 2026 · PreprintPlant Biology
Martijn C Sierksma, J. Gerard G. Borst
This study examines how delays in bushy cell axons contribute to sound localization in Mongolian gerbils, finding developmental changes in delay patterns and their impact on interaural time difference processing.
bioRxiv · Nov 2, 2026 · PreprintNeuroscience
Chansik Oh, Soon-Tae Kwon, Hyuk Nam Kwon, Jung-Hee Woo, Jeong Eun Lee, Sangyong Jung
This study shows that fucoxanthin protects mouse oocytes from postovulatory aging by activating NRF2 in cumulus cells, improving mitochondrial function and reducing oxidative stress.
bioRxiv · Nov 2, 2026 · PreprintCell Biology
Sheng‐Kai Hsu, Aimee J Schulz, Charles O. Hale, Germano Costa‐Neto, Zachary R. Miller, Michelle C. Stitzer, Travis Wrightsman, Jingjing Zhai, Wei‐Yun Lai, Henry D Dawson, Qifan Wang, Taylor AuBuchon‐Elder, Lara J. Brindisi, Elad Oren, Yun Luo, , Edward S. Buckler
This study identifies convergent genomic and gene-level constraints in grasses adapting to extreme environments using phylogenomic data and large language models.
bioRxiv · Nov 2, 2026 · PreprintEvolutionary Biology
Aayushi Gupta, Tukkapuram Venkata Lalith Krishna, Bipin Singh
ToxINsight provides a web platform for analyzing snake venom toxin sequences, structures, ligand interactions, and geographical distributions to aid in antivenom development.
bioRxiv · Nov 2, 2026 · PreprintBioinformatics
Samuel Koh Wee Han, Monique van Schie, Catherine Albrecht, Joao Ramalho, Bodhi Voss, Dolf Weijers
The paper identifies polar domains in Arabidopsis male and female gametophytes using conserved proteins, revealing a universal polarity system and uncovering novel polar domains.
bioRxiv · Nov 2, 2026 · PreprintPlant Biology
Zhiyue Jiang, Madeline Shono, Aisling Archdeacon, Giorgia Del Vecchio, Matteo Pellegrini
This study examines age-related changes in the canine oral microbiome, finding increased anaerobic taxa and amino acid degradation potential with age.
bioRxiv · Nov 2, 2026 · PreprintMicrobiology
Samuel Ugulini, Daniel B Hardy, Savita Dhanvantari
This study shows that CBD reduces glucagon secretion in mouse αTC1-6 cells by altering lysosomal trafficking and secretion pathways.
bioRxiv · Nov 2, 2026 · PreprintCell Biology
Hugo ROBIN, Maeliss GERMAIN, Chloe SILARD, Stephane DREANO, Yoann Augagneur, Svetlana Chabelskaya, Astrid Rouillon
This study identifies regulatory interactions between sRNAs and transcription factors in S. aureus, showing their roles in stress responses and virulence.
bioRxiv · Nov 2, 2026 · PreprintMicrobiology
Lara T Dasar, Matthew Hamilton, Daria Borisova, Imogen Lewis, Victoria Kjellin-Bennett, Vanessa Gargano, Ratnika Prakash, Kristine Beaulieu, Brendan M Gabriel
This study shows that exercise timing does not affect overall daily glucose exposure but alters acute glucose dynamics and variability.
bioRxiv · Nov 2, 2026 · PreprintPhysiology
Kai Ye, Minhui Guan, Andrew S Kim, Mitchell D Miller, Rulong Ma, Clark W Hamor, Aiden Wang, Ziqi Yuan, Bac T Le, James M Briggs, Xiu-feng Wan, Yizhi J Tao
This study determines the structure of influenza D virus NS1, identifies a novel Zn-binding site and RNA-binding activity in its CTD, and shows their importance for viral replication.
bioRxiv · Nov 2, 2026 · PreprintBiochemistry
Davide Maestri, Rachel Sklutuis, Lisa Beatrice Caruso, Sarah Preston-Alp, Martina Gatto, Samantha S Soldan, Pyounghwa Park, Lauren Melick, Laura Corveleyn, Simone Sidoli, Andrew Kossenkov, Aaron R Goldman, Wujuan Zhang, Hsin-Yao Tang, Giorgia Napoletani, , Italo Tempera
This study shows that NAD metabolism supports CTCF-cohesin chromatin regulation in EBV-transformed B-cells and identifies NAMPT inhibition as a potential therapeutic strategy.
bioRxiv · Nov 2, 2026 · PreprintMicrobiology
David Saeb, Emma E Lietzke, Evan A Wood, Ana F Costa, Emma C Aldrich, Daisy I Fuchs, Ashkon E Chaghajerdi, Kimberley D Bruce, Kayla G Sprenger
This study identifies the structural basis of sTREM2-TG2 interaction in Alzheimer's disease and develops improved peptide modulators based on these findings.
bioRxiv · Nov 2, 2026 · PreprintBioengineering
Emilia Kozlowska, Natalia Ziojla, Bartosz Nowak, Pawel Joachimiak, Magdalena Dabrowska-Maroszek, Magdalena Sikora, Oliwia Brodka, Marta Olejniczak, Agnieszka Fiszer
This study generates an isogenic iPSC panel to investigate ATN1's role in human development and disease, revealing proliferation deficits and toxic gain-of-function effects in mutant ATN1 lines.
bioRxiv · Nov 2, 2026 · PreprintCell Biology
Julianna Cavallaro, Dustin R Zuelke, Czarina M Maysonet, Ronald E Salazar, Ruby Setara, Eduardo F Gallo
This study shows that nucleus accumbens acetylcholine dips track reward value and delay, influencing adaptive choice in mice during delay discounting tasks.
bioRxiv · Nov 2, 2026 · PreprintNeuroscience