Author

A. Harmalkar

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Approach:experimental assay· 2 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Research Focus:cell signaling & trafficking· 1 Organism:E. coli· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

J. J. Gray· 3 shared C. Kleanthous· 1 shared C. V. Robinson· 1 shared E. Elliston· 1 shared J. T. Hopper· 1 shared M. N. Webby· 1 shared N. G. Housden· 1 shared P. Pham· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersBiophysics

J. J. Gray

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Author profile →

3 papers

Recent·Most cited

Advancing membrane-associated protein docking with improved sampling and scoring in Rosetta

R. Samnata, A. Harmalkar, P. Prathima, J. J. Gray

This paper introduces Rosetta-MPDock, a membrane protein docking method that improves prediction accuracy by capturing conformational changes and integrating AlphaFold2-multimer, achieving better success rates in predicting membrane protein complex structures.

bioRxiv · Jul 9, 2024Biophysics

Reliable protein-protein docking with AlphaFold, Rosetta and replica-exchange

A. Harmalkar, S. Lyskov, J. J. Gray

This paper improves protein complex structure prediction by combining AlphaFold with replica-exchange docking, achieving better results on challenging cases.

bioRxiv · Jul 28, 2023Biophysics

Colicin-mediated transport of DNA through the iron transporter FepA

R. Cohen-Khait, A. Harmalkar, P. Pham, M. N. Webby, N. G. Housden, E. Elliston, J. T. Hopper, S. Mohammed, C. V. Robinson, J. J. Gray, C. Kleanthous

This study shows colicin B uses the iron transporter FepA to transport DNA into E. coli, revealing a mechanism for cargo delivery through bacterial membranes.

bioRxiv · May 11, 2021Microbiology